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OXA-48β-内酰胺酶的晶体结构揭示了D类碳青霉烯酶之间的机制多样性。

Crystal structure of the OXA-48 beta-lactamase reveals mechanistic diversity among class D carbapenemases.

作者信息

Docquier Jean-Denis, Calderone Vito, De Luca Filomena, Benvenuti Manuela, Giuliani Francesco, Bellucci Luca, Tafi Andrea, Nordmann Patrice, Botta Maurizio, Rossolini Gian Maria, Mangani Stefano

机构信息

Dipartimento di Biologia Molecolare, Università di Siena, Italy.

出版信息

Chem Biol. 2009 May 29;16(5):540-7. doi: 10.1016/j.chembiol.2009.04.010.

Abstract

Carbapenem-hydrolyzing class D beta-lactamases (CHDLs) are enzymes found in important Gram-negative pathogens (mainly Acinetobacter baumannii and Enterobacteriaceae) that confer resistance to beta-lactam antibiotics, and notably carbapenems. The crystal structure of the OXA-48 carbapenemase was determined at pH 7.5 and at a resolution of 1.9 A. Surprisingly, and by contrast with OXA-24, the only other CHDL of known crystal structure, the structure of OXA-48 was similar to OXA-10, an enzyme devoid of carbapenemase activity, indicating that the hydrolysis of these compounds could depend on subtle changes in the active site region. Moreover, the active site groove of OXA-48 was different from that of OXA-24 in shape, dimensions, and charge distribution. Molecular dynamics pointed to the functional relevance of residues located in or close to the beta5-beta6 loop and allowed us to propose a mechanism for carbapenem hydrolysis by OXA-48.

摘要

碳青霉烯水解D类β-内酰胺酶(CHDLs)是在重要的革兰氏阴性病原体(主要是鲍曼不动杆菌和肠杆菌科细菌)中发现的酶,可赋予对β-内酰胺抗生素尤其是碳青霉烯类抗生素的耐药性。OXA-48碳青霉烯酶的晶体结构在pH 7.5条件下以1.9 Å的分辨率测定。令人惊讶的是,与已知晶体结构的另一种CHDL即OXA-24相比,OXA-48的结构与缺乏碳青霉烯酶活性的OXA-10相似,这表明这些化合物的水解可能取决于活性位点区域的细微变化。此外,OXA-48的活性位点凹槽在形状、尺寸和电荷分布方面与OXA-24不同。分子动力学表明位于β5-β6环内或附近的残基具有功能相关性,并使我们能够提出OXA-48水解碳青霉烯的机制。

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