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来自克氏锥虫的Q4DV70的结晶及初步X射线衍射分析,Q4DV70是一种具有假定硫氧还蛋白结构域的假定蛋白。

Crystallization and preliminary X-ray diffraction analysis of Q4DV70 from Trypanosoma cruzi, a hypothetical protein with a putative thioredoxin domain.

作者信息

dos Santos Camila Ramos, Fessel Melissa Regina, Vieira Leandro de Carvalho, Krieger Marco Aurélio, Goldenberg Samuel, Guimarães Beatriz Gomes, Zanchin Nilson Ivo Tonin, Barbosa João Alexandre Ribeiro Gonçalves

机构信息

Center for Structural Molecular Biology (CeBiME), Brazilian Synchrotron Light Laboratory (LNLS), CP 6192, 13084-971 Campinas-SP, Brazil.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Jun 1;65(Pt 6):641-4. doi: 10.1107/S1744309109017734. Epub 2009 May 23.

Abstract

Q4DV70 is annotated in the Trypanosoma cruzi CL Brener genome as a hypothetical protein with a predicted thioredoxin-like fold, although the catalytic cysteine residues that are conserved in typical oxidoreductases are replaced by serine residues. Gene-expression analysis indicates that this protein is differentially expressed during the T. cruzi life cycle, suggesting that it plays an important role during T. cruzi development. The gene coding for Q4DV70 was cloned and the protein was overexpressed in Escherichia coli with an N-terminal His tag. Purification of Q4DV70 was carried out by affinity and size-exclusion chromatography and the His tag was removed by TEV protease digestion. Crystals of Q4DV70 were grown using the sitting-drop vapour-diffusion method. A diffraction data set was collected to 1.50 A resolution from a single crystal grown in 25% PEG 1500, 200 mM sodium thiocyanate pH 6.9, 10 mM phenol and 10% ethylene glycol. The crystal belonged to space group P2(1)2(1)2(1), with unit-cell parameters a = 35.04, b = 50.32, c = 61.18 A. The Q4DV70 structure was solved by molecular replacement using protein disulfide isomerase from yeast (PDB code 2b5e) as a search model. Initial refinement of the model indicated that the solution was correct. These data are being used for refinement of the model of Q4DV70.

摘要

在克氏锥虫CL Brener基因组中,Q4DV70被注释为一种具有预测的硫氧还蛋白样折叠的假定蛋白,尽管典型氧化还原酶中保守的催化半胱氨酸残基被丝氨酸残基取代。基因表达分析表明,该蛋白在克氏锥虫生命周期中差异表达,这表明它在克氏锥虫发育过程中发挥重要作用。编码Q4DV70的基因被克隆,该蛋白在大肠杆菌中带有N端His标签进行过表达。通过亲和色谱和尺寸排阻色谱对Q4DV70进行纯化,并通过TEV蛋白酶消化去除His标签。使用坐滴气相扩散法培养Q4DV70的晶体。从在25% PEG 1500、200 mM硫氰酸钠pH 6.9、10 mM苯酚和10%乙二醇中生长的单个晶体收集了分辨率为1.50 Å的衍射数据集。该晶体属于空间群P2(1)2(1)2(1),晶胞参数a = 35.04、b = 50.32、c = 61.18 Å。使用来自酵母的蛋白质二硫键异构酶(PDB代码2b5e)作为搜索模型,通过分子置换法解析了Q4DV70的结构。模型的初步精修表明该解决方案是正确的。这些数据正用于Q4DV70模型的精修。

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