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研究染色体范围的转录网络:对疾病的新认识?

Studying chromosome-wide transcriptional networks: new insights into disease?

机构信息

Helicos BioSciences Corporation, One Kendall Square Bldg 700, Cambridge, MA 02139, USA.

出版信息

Genome Med. 2009 May 11;1(5):50. doi: 10.1186/gm50.

DOI:10.1186/gm50
PMID:19480644
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2689442/
Abstract

A large amount of experimental data collected over the last decade has shown that genomic organization is very complex and has highlighted the fact that the current set of gene annotations does not fully capture this complexity. Much of the RNA detected in a cell is found to originate from outside the exons of annotated genes. Exons of annotated and unannotated transcripts separated by large genomic distances can be joined together in chimeric transcripts. Any given base-pair in a genome could be traversed by many protein-coding and non-coding RNAs. We discuss the implications of these effects for our understanding of disease.

摘要

过去十年收集的大量实验数据表明,基因组组织非常复杂,并强调了当前的基因注释集并没有完全捕捉到这种复杂性。在细胞中检测到的大量 RNA 被发现源自注释基因的外显子之外。由大的基因组距离分隔的注释和未注释转录本的外显子可以在嵌合转录本中连接在一起。基因组中的任何给定碱基对都可能被许多编码蛋白和非编码 RNA 穿过。我们讨论了这些影响对我们理解疾病的意义。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3cc2/2689442/0b606e510b73/gm50-1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3cc2/2689442/0b606e510b73/gm50-1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3cc2/2689442/0b606e510b73/gm50-1.jpg

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本文引用的文献

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Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs.转录后加工产生了多种5'端修饰的长链和短链RNA。
Nature. 2009 Feb 19;457(7232):1028-32. doi: 10.1038/nature07759. Epub 2009 Jan 25.
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Alternative isoform regulation in human tissue transcriptomes.人类组织转录组中的可变亚型调控
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Functional genetic variation of human miRNAs and phenotypic consequences.人类微小RNA的功能遗传变异及其表型后果。
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Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions.在ENCODE区域中5'远端转录起始位点的显著使用以及大量额外外显子的发现。
Genome Res. 2007 Jun;17(6):746-59. doi: 10.1101/gr.5660607.
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10
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Science. 2007 Feb 9;315(5813):848-53. doi: 10.1126/science.1136678.