Crombach Anton, Hogeweg Paulien
Theoretical Biology and Bioinformatics Group, Utrecht University, Utrecht, The Netherlands.
BMC Evol Biol. 2009 Jun 1;9:122. doi: 10.1186/1471-2148-9-122.
Resource cycling is a defining process in the maintenance of the biosphere. Microbial communities, ranging from simple to highly diverse, play a crucial role in this process. Yet the evolutionary adaptation and speciation of micro-organisms have rarely been studied in the context of resource cycling. In this study, our basic questions are how does a community evolve its resource usage and how are resource cycles partitioned?
We design a computational model in which a population of individuals evolves to take up nutrients and excrete waste. The waste of one individual is another's resource. Given a fixed amount of resources, this leads to resource cycles. We find that the shortest cycle dominates the ecological dynamics, and over evolutionary time its length is minimized. Initially a single lineage processes a long cycle of resources, later crossfeeding lineages arise. The evolutionary dynamics that follow are determined by the strength of indirect selection for resource cycling. We study indirect selection by changing the spatial setting and the strength of direct selection. If individuals are fixed at lattice sites or direct selection is low, indirect selection result in lineages that structure their local environment, leading to 'smart' individuals and stable patterns of resource dynamics. The individuals are good at cycling resources themselves and do this with a short cycle. On the other hand, if individuals randomly change position each time step, or direct selection is high, individuals are more prone to crossfeeding: an ecosystem based solution with turbulent resource dynamics, and individuals that are less capable of cycling resources themselves.
In a baseline model of ecosystem evolution we demonstrate different eco-evolutionary trajectories of resource cycling. By varying the strength of indirect selection through the spatial setting and direct selection, the integration of information by the evolutionary process leads to qualitatively different results from individual smartness to cooperative community structures.
资源循环是维持生物圈的一个决定性过程。从简单到高度多样的微生物群落在此过程中发挥着关键作用。然而,微生物的进化适应和物种形成在资源循环的背景下很少被研究。在本研究中,我们的基本问题是群落如何进化其资源利用方式以及资源循环是如何划分的?
我们设计了一个计算模型,其中个体群体进化以摄取营养物质并排泄废物。一个个体的废物是另一个个体的资源。在给定固定数量资源的情况下,这会导致资源循环。我们发现最短的循环主导着生态动态,并且在进化过程中其长度会被最小化。最初,单一谱系处理一个长的资源循环,后来出现了交叉喂养谱系。随后的进化动态由资源循环的间接选择强度决定。我们通过改变空间设置和直接选择强度来研究间接选择。如果个体固定在晶格位点或直接选择较低,间接选择会导致谱系构建其局部环境,从而产生“聪明”的个体和稳定的资源动态模式。这些个体本身善于循环利用资源,并且通过短循环来实现。另一方面,如果个体在每个时间步随机改变位置,或者直接选择较高,个体更倾向于交叉喂养:一种基于生态系统的解决方案,具有动荡的资源动态,并且个体自身循环利用资源的能力较弱。
在生态系统进化的基线模型中,我们展示了资源循环的不同生态进化轨迹。通过改变空间设置和直接选择的间接选择强度,进化过程中的信息整合导致了从个体聪明到合作群落结构的质的不同结果。