Bostick David L, Brooks Charles L
Department of Chemistry and Program in Biophysics, The University of Michigan, Ann Arbor, Michigan, USA.
Biophys J. 2009 Jun 3;96(11):4470-92. doi: 10.1016/j.bpj.2009.03.001.
To provide utility in understanding the molecular evolution of ion-selective biomembrane channels/transporters, globular proteins, and ionophoric compounds, as well as in guiding their modification and design, we present a statistical mechanical basis for deconstructing the impact of the coordination structure and chemistry of selective multidentate ionic complexes. The deconstruction augments familiar ideas in liquid structure theory to realize the ionic complex as an open ion-ligated system acting under the influence of an "external field" provided by the host (or surrounding medium). Using considerations derived from this basis, we show that selective complexation arises from exploitation of a particular ion's coordination preferences. These preferences derive from a balance of interactions much like that which dictates the Hofmeister effect. By analyzing the coordination-state space of small family IA and VIIA ions in simulated fluid media, we derive domains of coordinated states that confer selectivity for a given ion upon isolating and constraining particular attributes (order parameters) of a complex comprised of a given type of ligand. We demonstrate that such domains may be used to rationalize the ion-coordinated environments provided by selective ionophores and biological ion channels/transporters of known structure, and that they can serve as a means toward deriving rational design principles for ion-selective hosts.
为了有助于理解离子选择性生物膜通道/转运蛋白、球状蛋白和离子载体化合物的分子进化,并指导它们的修饰和设计,我们提出了一种统计力学基础,用于解构选择性多齿离子络合物的配位结构和化学性质的影响。这种解构扩展了液体结构理论中的常见观点,将离子络合物视为一个开放的离子配位系统,在主体(或周围介质)提供的“外场”影响下发挥作用。基于这一基础进行的思考,我们表明选择性络合源于对特定离子配位偏好的利用。这些偏好源于相互作用的平衡,这与决定霍夫迈斯特效应的平衡非常相似。通过分析模拟流体介质中小的IA族和VIIA族离子的配位状态空间,我们得出了配位状态域,当隔离并约束由给定类型配体组成的络合物的特定属性(序参量)时,这些配位状态域赋予对给定离子的选择性。我们证明,这些域可用于合理化由选择性离子载体和已知结构的生物离子通道/转运蛋白提供的离子配位环境,并且它们可以作为推导离子选择性主体合理设计原则的一种手段。