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新属新种海洋红杆菌科的隐藻海洋红杆菌及新种滨海海洋红杆菌,从海洋生境中分离得到。

Marivita cryptomonadis gen. nov., sp. nov. and Marivita litorea sp. nov., of the family Rhodobacteraceae, isolated from marine habitats.

作者信息

Hwang Chung Y, Bae Gi D, Yih Wonho, Cho Byung C

机构信息

School of Earth and Environmental Sciences and Research Institute of Oceanography, Seoul National University, San 56-1, Shillim-dong, Kwanak-gu, Seoul 151-742, Republic of Korea.

出版信息

Int J Syst Evol Microbiol. 2009 Jul;59(Pt 7):1568-75. doi: 10.1099/ijs.0.005462-0. Epub 2009 Jun 15.

Abstract

Two strictly aerobic, Gram-negative, rod-shaped bacteria containing photosynthesis-related genes, designated strains CL-SK44(T) and CL-JM1(T), were isolated from a culture of the marine phytoplankton Cryptomonas sp. and coastal seawater from Korea, respectively. Phylogenetic analysis of 16S rRNA gene sequences revealed that the two strains were related to members of the genera Thalassobius (95.3-96.7 % similarity), Pelagibaca (95.3-96.0 %) and Donghicola (95.6 %) in the family Rhodobacteraceae. However, the two novel strains did not form a robust clade with any species of the Roseobacter clade, forming a distinct clade. The major polar lipids of the strains were phosphatidylcholine, phosphatidylglycerol, phosphatidylethanolamine, diphosphatidylglycerol, an unidentified aminolipid and an unidentified lipid, profiles that were distinguishable from those of the related genera examined. Although the level of 16S rRNA gene sequence similarity between strains CL-SK44(T) and CL-JM1(T) was very high (99.1 %), DNA-DNA relatedness between the strains was 13 %, suggesting that they represent genomically distinct species. In addition, the two strains could be differentiated based on the presence of a minor polar lipid, on the hydrolysis of gelatin and the utilization of carbon sources. Based on the data from the present study, strains CL-SK44(T) and CL-JM1(T) are considered to represent separate novel species of a new genus of the family Rhodobacteraceae, for which the names Marivita cryptomonadis gen. nov., sp. nov. (type species) and Marivita litorea sp. nov. are proposed. The type strains of Marivita cryptomonadis and Marivita litorea are CL-SK44(T) (=KCCM 90070(T)=JCM 15447(T)) and CL-JM1(T) (=KCCM 90071(T)=JCM 15446(T)), respectively.

摘要

从韩国海洋浮游植物隐藻属培养物和沿海海水中分别分离出两株严格需氧、革兰氏阴性、杆状的含有光合作用相关基因的细菌,分别命名为CL-SK44(T)和CL-JM1(T)。16S rRNA基因序列的系统发育分析表明,这两株菌与红杆菌科中海生杆菌属(相似性为95.3 - 96.7%)、远洋杆菌属(95.3 - 96.0%)和东海杆菌属(95.6%)的成员相关。然而,这两株新菌未与玫瑰杆菌属的任何物种形成一个稳定的进化分支,而是形成了一个独特的进化分支。这些菌株的主要极性脂类为磷脂酰胆碱、磷脂酰甘油、磷脂酰乙醇胺、二磷脂酰甘油、一种未鉴定的氨基脂类和一种未鉴定的脂类,其图谱与所检测的相关属的图谱不同。尽管菌株CL-SK44(T)和CL-JM1(T)之间的16S rRNA基因序列相似性水平非常高(99.1%),但两菌株之间的DNA - DNA相关性为13%,这表明它们代表基因组上不同的物种。此外,这两株菌可根据一种次要极性脂类的存在、明胶的水解和碳源的利用情况进行区分。基于本研究的数据,菌株CL-SK44(T)和CL-JM1(T)被认为代表红杆菌科一个新属的两个不同新物种,为此提出新属名为海洋隐藻共生菌属(Marivita cryptomonadis gen. nov.)、新种名为海洋隐藻共生菌(Marivita cryptomonadis sp. nov.)(模式种)和新种名为滨海海洋隐藻共生菌(Marivita litorea sp. nov.)。海洋隐藻共生菌和滨海海洋隐藻共生菌的模式菌株分别为CL-SK44(T)(=KCCM 90070(T)=JCM 15447(T))和CL-JM1(T)(=KCCM 90071(T)=JCM 15446(T))。

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