• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

脊椎动物中Hox基因簇的进化与维持以及硬骨鱼特有的基因组复制

The evolution and maintenance of Hox gene clusters in vertebrates and the teleost-specific genome duplication.

作者信息

Kuraku Shigehiro, Meyer Axel

机构信息

Lehrstuhl fur Zoologie und Evolutionsbiologie, Department of Biology, University of Konstanz, Germany.

出版信息

Int J Dev Biol. 2009;53(5-6):765-73. doi: 10.1387/ijdb.072533km.

DOI:10.1387/ijdb.072533km
PMID:19557682
Abstract

Hox genes are known to specify spatial identities along the anterior-posterior axis during embryogenesis. In vertebrates and most other deuterostomes, they are arranged in sets of uninterrupted clusters on chromosomes, and are in most cases expressed in a "colinear" fashion, in which genes closer to the 3-end of the Hox clusters are expressed earlier and more anteriorly and genes close to the 5-end of the clusters later and more posteriorly. In this review, we summarize the current understanding of how Hox gene clusters have been modified from basal lineages of deuterostomes to diverse taxa of vertebrates. Our parsimony reconstruction of Hox cluster architecture at various stages of vertebrate evolution highlights that the variation in Hox cluster structures among jawed vertebrates is mostly due to secondary lineage-specific gene losses and an additional genome duplication that occurred in the actinopterygian stem lineage, the teleost-specific genome duplication (TSGD).

摘要

已知Hox基因在胚胎发育过程中沿前后轴指定空间身份。在脊椎动物和大多数其他后口动物中,它们以不间断的簇集形式排列在染色体上,并且在大多数情况下以“共线性”方式表达,即靠近Hox簇3'端的基因更早且更靠前表达,而靠近簇5'端的基因则更晚且更靠后表达。在这篇综述中,我们总结了目前对Hox基因簇如何从后口动物的基础谱系演变为脊椎动物的不同分类群的理解。我们对脊椎动物进化各个阶段Hox簇结构的简约重建突出表明,有颌脊椎动物中Hox簇结构的变化主要是由于次生谱系特异性基因丢失以及在辐鳍鱼干群谱系中发生的一次额外的基因组复制,即硬骨鱼特异性基因组复制(TSGD)。

相似文献

1
The evolution and maintenance of Hox gene clusters in vertebrates and the teleost-specific genome duplication.脊椎动物中Hox基因簇的进化与维持以及硬骨鱼特有的基因组复制
Int J Dev Biol. 2009;53(5-6):765-73. doi: 10.1387/ijdb.072533km.
2
Hox clusters as models for vertebrate genome evolution.作为脊椎动物基因组进化模型的Hox基因簇
Trends Genet. 2005 Aug;21(8):421-4. doi: 10.1016/j.tig.2005.06.004.
3
The "fish-specific" Hox cluster duplication is coincident with the origin of teleosts.“鱼类特有的”Hox基因簇复制与硬骨鱼的起源同时发生。
Mol Biol Evol. 2006 Jan;23(1):121-36. doi: 10.1093/molbev/msj020. Epub 2005 Sep 14.
4
Estimation of Hox gene cluster number in lampreys.七鳃鳗中Hox基因簇数量的估计。
Int J Dev Biol. 1998 May;42(4):617-20.
5
The bithorax complex of Drosophila an exceptional Hox cluster.果蝇的双胸复合体——一个特殊的同源异型基因簇。
Curr Top Dev Biol. 2009;88:1-33. doi: 10.1016/S0070-2153(09)88001-0.
6
Hox clusters of the bichir (Actinopterygii, Polypterus senegalus) highlight unique patterns of sequence evolution in gnathostome phylogeny.南美肺鱼(硬骨鱼纲,多鳍鱼目,南美肺鱼属)的同源异型盒基因簇突出了颌口动物系统发育中独特的序列进化模式。
J Exp Zool B Mol Dev Evol. 2011 Sep 15;316(6):451-64. doi: 10.1002/jez.b.21420. Epub 2011 Jun 17.
7
[Hox genes, developmental evolution and the origin of vertebrates].[同源框基因、发育进化与脊椎动物的起源]
Ontogenez. 1996 Jul-Aug;27(4):273-9.
8
Organization of the Fugu rubripes Hox clusters: evidence for continuing evolution of vertebrate Hox complexes.红鳍东方鲀Hox基因簇的组织架构:脊椎动物Hox复合体持续进化的证据
Nat Genet. 1997 May;16(1):79-83. doi: 10.1038/ng0597-79.
9
Evidence for independent Hox gene duplications in the hagfish lineage: a PCR-based gene inventory of Eptatretus stoutii.盲鳗谱系中独立Hox基因重复的证据:基于PCR的 stoutii盲鳗基因目录
Mol Phylogenet Evol. 2004 Sep;32(3):686-94. doi: 10.1016/j.ympev.2004.03.015.
10
Do cnidarians have a ParaHox cluster? Analysis of synteny around a Nematostella homeobox gene cluster.刺胞动物有副同源框基因簇吗?海葵同源框基因簇周围的共线性分析。
Evol Dev. 2008 Nov-Dec;10(6):725-30. doi: 10.1111/j.1525-142X.2008.00286.x.

引用本文的文献

1
Teleost code defines regional identities competent for the formation of dorsal and anal fins.硬骨鱼的同源框基因编码决定了背部和尾部鳍形成的区域特征。
Proc Natl Acad Sci U S A. 2024 Jun 18;121(25):e2403809121. doi: 10.1073/pnas.2403809121. Epub 2024 Jun 11.
2
Post-meiotic mechanism of facultative parthenogenesis in gonochoristic whiptail lizard species.有性生殖的涡蜥物种中兼性孤雌生殖的减数分裂后机制。
Elife. 2024 Jun 7;13:e97035. doi: 10.7554/eLife.97035.
3
Enigmatic Nodal and Lefty gene repertoire discrepancy: Latent evolutionary history revealed by vertebrate-wide phylogeny.
神秘的Nodal和Lefty基因库差异:脊椎动物全系统发育揭示的潜在进化史
Dev Dyn. 2024 Apr 22. doi: 10.1002/dvdy.710.
4
Chromosomal DNA sequences of the Pacific saury genome: versatile resources for fishery science and comparative biology.太平洋褶柔鱼基因组的染色体 DNA 序列:渔业科学和比较生物学的多功能资源。
DNA Res. 2024 Apr 1;31(2). doi: 10.1093/dnares/dsae004.
5
Zebrafish as a Model to Study Retinoic Acid Signaling in Development and Disease.斑马鱼作为研究发育和疾病中视黄酸信号传导的模型
Biomedicines. 2023 Apr 15;11(4):1180. doi: 10.3390/biomedicines11041180.
6
HOX-Gene Cluster Organization and Genome Duplications in Fishes and Mammals: Transcript Variant Distribution along the Anterior-Posterior Axis.HOX 基因簇组织和鱼类及哺乳动物的基因组加倍:沿前后轴的转录变体分布。
Int J Mol Sci. 2022 Sep 1;23(17):9990. doi: 10.3390/ijms23179990.
7
Diversification and Functional Evolution of HOX Proteins.HOX蛋白的多样化与功能进化
Front Cell Dev Biol. 2022 May 13;10:798812. doi: 10.3389/fcell.2022.798812. eCollection 2022.
8
Widespread retention of ohnologs in key developmental gene families following whole-genome duplication in arachnopulmonates.蛛形纲动物全基因组复制后,关键发育基因家族中的同系物广泛保留。
G3 (Bethesda). 2021 Dec 8;11(12). doi: 10.1093/g3journal/jkab299.
9
Analysis of copy number variation in dogs implicates genomic structural variation in the development of anterior cruciate ligament rupture.分析犬的拷贝数变异提示基因组结构变异在前交叉韧带断裂的发生中起作用。
PLoS One. 2020 Dec 31;15(12):e0244075. doi: 10.1371/journal.pone.0244075. eCollection 2020.
10
, a New Marker for the Nervous System of the Tunicate ., 一种新的被囊动物神经系统标志物 。
Genes (Basel). 2020 Aug 27;11(9):1006. doi: 10.3390/genes11091006.