Suppr超能文献

使用五态模型拟合MaxiK通道的幅度直方图:β分布揭示的信息超出预期。

Using a five-state model for fitting amplitude histograms from MaxiK channels: beta-distributions reveal more than expected.

作者信息

Schroeder Indra, Hansen Ulf-Peter

机构信息

Department of Structural Biology, University of Kiel, 24098 Kiel, Germany.

出版信息

Eur Biophys J. 2009 Oct;38(8):1101-14. doi: 10.1007/s00249-009-0515-0. Epub 2009 Jul 21.

Abstract

Fast gating of ion channels with rate constants higher than the corner frequency of the recording set-up can be evaluated by fitting so-called beta distributions to measured amplitude histograms. Up to now, this was preferentially done for O-C Markov sub-models with one open and one closed state. Here, a fit of the amplitude histograms from MaxiK (BK) single-channel records was achieved with a five-state model with two open and three closed states including three open-close transitions with rate constants higher than the corner frequency (20 kHz) of the inevitable low-pass filter of the recording system. The numerical values of the rate constants of these transitions enabled a nearly one-to-one relationship between typical regions of the histograms and the reactions in the Markov model. These characteristic features are the width of the peak at the apparent single-channel current, the side slopes at the open and at the closed peak, and the depth of the valley between the two peaks. However, the simplex routine alone was incapable of finding the solution but could do so if guided by hand along a suggested strategy.

摘要

通过将所谓的β分布拟合到测量的幅度直方图,可以评估速率常数高于记录装置转折频率的离子通道快速门控。到目前为止,这主要是针对具有一个开放状态和一个关闭状态的O-C马尔可夫子模型进行的。在此,通过一个具有两个开放状态和三个关闭状态的五态模型,对MaxiK(BK)单通道记录的幅度直方图进行了拟合,该模型包括三个开放-关闭转变,其速率常数高于记录系统不可避免的低通滤波器的转折频率(20 kHz)。这些转变的速率常数的数值使得直方图的典型区域与马尔可夫模型中的反应之间几乎存在一一对应关系。这些特征包括表观单通道电流处峰值的宽度、开放和关闭峰值处的侧边斜率以及两个峰值之间谷底的深度。然而,单纯形算法本身无法找到解决方案,但如果按照建议的策略手动引导,就可以找到解决方案。

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验