Department of Microbiology and Parasitology, Faculty of Pharmacy, University of Sevilla, 41012 Sevilla, Spain.
Int J Syst Evol Microbiol. 2010 Apr;60(Pt 4):963-971. doi: 10.1099/ijs.0.014480-0. Epub 2009 Aug 6.
We have carried out a polyphasic taxonomic characterization of the type strains of the species with the recently validated name Salinicola socius, together with two species that were phylogenetically closely related, Halomonas salaria and Chromohalobacter salarius. 16S rRNA gene sequence analyses showed that they constituted a coherent cluster, with sequence similarities between 98.7 and 97.7 %. We have determined the almost complete 23S rRNA gene sequences of these three type strains, and the percentage of similarity between them was 99.2-97.6 %. Phylogenetic trees based on the 16S rRNA and 23S rRNA gene sequences, obtained by using three different algorithms, were consistent and showed that these three species constituted a cluster separated from the other species of the genera of the family Halomonadaceae, supporting their placement in a single genus. All three species have ubiquinone 9 as the major respiratory quinone, and showed similar fatty acid and polar lipid profiles. The level of DNA-DNA hybridization between Salinicola socius DSM 19940(T), Halomonas salaria DSM 18044(T) and Chromohalobacter salarius CECT 5903(T) was 41-21 %, indicating that they are different species of the genus Salinicola. A comparative phenotypic study of these strains following the proposed minimal standards for describing new taxa of the family Halomonadaceae has been carried out. The phenotypic data are consistent with the placement of these three species in a single genus and support their differentiation at the species level. On the basis of these data we have emended the description of the species Salinicola socius and we propose to transfer the species Halomonas salaria and Chromohalobacter salarius to the genus Salinicola, as Salinicola salarius comb. nov. (type strain M27(T) =KCTC 12664(T) =DSM 18044(T)) and Salinicola halophilus nom. nov. (type strain CG4.1(T) =CECT 5903(T) =LMG 23626(T)), respectively.
我们对经最近验证的名称 Salinicola socius 的模式菌株以及与其亲缘关系密切的两个种 Halomonas salaria 和 Chromohalobacter salarius 进行了多相分类鉴定。16S rRNA 基因序列分析表明,它们构成了一个连贯的聚类,序列相似性在 98.7%和 97.7%之间。我们已经确定了这三个模式菌株的几乎完整的 23S rRNA 基因序列,它们之间的相似性百分比为 99.2-97.6%。基于三个不同算法构建的 16S rRNA 和 23S rRNA 基因序列的系统发育树是一致的,表明这三个种构成了一个与 Halomonadaceae 科其他属的种分离的聚类,支持它们归属于一个单独的属。这三个种都以泛醌 9 作为主要呼吸醌,并且具有相似的脂肪酸和极性脂谱。Salinicola socius DSM 19940(T)、Halomonas salaria DSM 18044(T)和 Chromohalobacter salarius CECT 5903(T) 之间的 DNA-DNA 杂交水平为 41-21%,表明它们是 Salinicola 属的不同种。对这些菌株进行了按照 Halomonadaceae 科描述新种的建议最低标准进行的比较表型研究。表型数据与这些种在一个属中的归属一致,并支持它们在种水平上的分化。基于这些数据,我们修订了 Salinicola socius 种的描述,并建议将种 Halomonas salaria 和 Chromohalobacter salarius 转移到 Salinicola 属,分别作为 Salinicola salarius comb. nov.(模式株 M27(T)=KCTC 12664(T)=DSM 18044(T))和 Salinicola halophilus nom. nov.(模式株 CG4.1(T)=CECT 5903(T)=LMG 23626(T))。