Olsson Björn E, Korsakova Ekaterina S, Anan'ina Lyudmila N, Pyankova Anna A, Mavrodi Olga V, Plotnikova Elena G, Mavrodi Dmitri V
University of Skövde, School of Bioscience, Skövde, Sweden.
Institute of Ecology and Genetics of Microorganisms, Ural Branch of the Russian Academy of Sciences, Perm, Russia.
Stand Genomic Sci. 2017 Jul 19;12:39. doi: 10.1186/s40793-017-0251-5. eCollection 2017.
Halomonads are moderately halophilic bacteria that are studied as models of prokaryotic osmoadaptation and sources of enzymes and chemicals for biotechnological applications. Despite the progress in understanding the diversity of these organisms, our ability to explain ecological, metabolic, and biochemical traits of halomonads at the genomic sequence level remains limited. This study addresses this gap by presenting draft genomes of SMB35, sp. MH3R3-1 and sp. SMB17, which were isolated from potash mine tailings in the Verkhnekamsk salt deposit area of Russia. The analysis of these genomes confirmed the importance of ectoines and quaternary amines to the capacity of halomonads to tolerate osmotic stress and adapt to hypersaline environments. The study also revealed that and share 75-90% of the predicted proteome, but also harbor a set of genus-specific genes, which in amounted to approximately 0.5 Mbp. These genus-specific genome segments may contribute to the phenotypic diversity of the and the ability of these organisms to adapt to changing environmental conditions and colonize new ecological niches.
嗜盐单胞菌是中度嗜盐细菌,作为原核生物渗透适应的模型以及生物技术应用中酶和化学物质的来源进行研究。尽管在了解这些生物的多样性方面取得了进展,但我们在基因组序列水平上解释嗜盐单胞菌的生态、代谢和生化特征的能力仍然有限。本研究通过展示从俄罗斯弗尔赫涅卡姆斯克盐矿区钾盐矿尾矿中分离出的SMB35、sp. MH3R3-1和sp. SMB17的基因组草图来填补这一空白。对这些基因组的分析证实了ectoine和季胺对嗜盐单胞菌耐受渗透胁迫和适应高盐环境能力的重要性。该研究还表明,[此处原文缺失相关菌名]和[此处原文缺失相关菌名]共享75 - 90%的预测蛋白质组,但也含有一组属特异性基因,在[此处原文缺失相关菌名]中这些基因总计约0.5 Mbp。这些属特异性基因组片段可能有助于[此处原文缺失相关菌名]的表型多样性以及这些生物适应不断变化的环境条件和定殖新生态位的能力。