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基于微卫星图谱比较新型隐球菌格特变种环境分离株和临床分离株的基因型。

Comparison of genotypes between environmental and clinical isolates of Cryptococcus neoformans var. grubii based on microsatellite patterns.

机构信息

Medical Mycology Research Center, Chiba University, Japan 1-8-1 Inohana, Chuo-ku, Chiba, 260-8673, Japan.

出版信息

Mycopathologia. 2010 Jan;169(1):47-55. doi: 10.1007/s11046-009-9230-8.

DOI:10.1007/s11046-009-9230-8
PMID:19680781
Abstract

We applied multilocus microsatellite typing (MLMT) method to investigate the genetic relation between Cryptococcus neoformans var. grubii clinical and environmental isolates in São Paulo, Brazil. This MLMT method includes three functional gene sequences of C. neoformans var. grubii, which are dispersed on three chromosomes. In all, 89 strains (36 clinical and 53 environmental isolates) were analyzed. Of 36 clinical strains, 20 belonged to a major type of MLMT-13 (55.6%). They were mainly isolated from clinical specimens. About 52.8% of strains from the environment belong to a major type of MLMT-36, which are indigenous to environments and which were not isolated from clinical samples. Thus, we recognized two genotypes that distinguish majority of clinical and environmental strains. No differences were found in antifungal susceptibility and capsule size between major environmental and clinical MLMT types.

摘要

我们应用多位点微卫星分型(MLMT)方法来研究巴西圣保罗的新型隐球菌格卢变种临床和环境分离株之间的遗传关系。该 MLMT 方法包括新型隐球菌格卢变种的三个功能基因序列,这些序列分散在三个染色体上。总共分析了 89 株(36 株临床株和 53 株环境分离株)。在 36 株临床株中,20 株属于 MLMT-13 的主要类型(55.6%)。它们主要从临床标本中分离得到。约 52.8%的环境株属于 MLMT-36 的主要类型,这些是环境中的本土株,并非从临床样本中分离得到。因此,我们识别出两种主要的基因型,它们可以区分大多数临床和环境分离株。主要的环境和临床 MLMT 类型之间的抗真菌敏感性和荚膜大小没有差异。

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本文引用的文献

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Radial mass density, charge, and epitope distribution in the Cryptococcus neoformans capsule.新型隐球菌荚膜中的径向质量密度、电荷和表位分布。
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Most cases of cryptococcal meningitis in HIV-uninfected patients in Vietnam are due to a distinct amplified fragment length polymorphism-defined cluster of Cryptococcus neoformans var. grubii VN1.越南北部 HIV 阴性患者中大多数隐球菌性脑膜炎是由新型隐球菌变种格卢比氏变种 VN1 的特定扩增片段长度多态性定义的聚类引起的。
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Multilocus sequence typing reveals three genetic subpopulations of Cryptococcus neoformans var. grubii (serotype A), including a unique population in Botswana.多位点序列分型揭示了新型隐球菌格鲁比变种(血清型A)的三个遗传亚群,其中包括博茨瓦纳的一个独特群体。
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