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在蛋白质L的疏水核心中鉴定出一种机械变阻器。

Identification of a mechanical rheostat in the hydrophobic core of protein L.

作者信息

Sadler David P, Petrik Eva, Taniguchi Yukinori, Pullen James R, Kawakami Masaru, Radford Sheena E, Brockwell David J

机构信息

Astbury Centre for Structural Molecular Biology, Institute of Molecular and Cellular Biology, University of Leeds, Leeds LS2 9JT, UK.

出版信息

J Mol Biol. 2009 Oct 16;393(1):237-48. doi: 10.1016/j.jmb.2009.08.015. Epub 2009 Aug 13.

Abstract

The ability of proteins and their complexes to withstand or respond to mechanical stimuli is vital for cells to maintain their structural organisation, to relay external signals and to facilitate unfolding and remodelling. Force spectroscopy using the atomic force microscope allows the behaviour of single protein molecules under an applied extension to be investigated and their mechanical strength to be quantified. protein L, a simple model protein, displays moderate mechanical strength and is thought to unfold by the shearing of two mechanical sub-domains. Here, we investigate the importance of side-chain packing for the mechanical strength of protein L by measuring the mechanical strength of a series of protein L variants containing single conservative hydrophobic volume deletion mutants. Of the five thermodynamically destabilized variants characterised, only one residue (I60 V) close to the interface between two mechanical sub-domains was found to differ in mechanical properties to wild type (Delta F(I60 V-WT)=-36 pN at 447 nm s(-1), Delta x(uI60V-WT)=0.2 nm). Phi-value analysis of the unfolding data revealed a highly native transition state. To test whether the number of hydrophobic contacts across the mechanical interface does affect the mechanical strength of protein L, we measured the mechanical properties of two further variants. protein L L10F, which increases core packing but does not enhance interfacial contacts, increased mechanical strength by 13+/-11 pN at 447 nm s(-1). By contrast, protein L I60F, which increases both core and cross-interface contacts, increased mechanical strength by 72+/-13 pN at 447 nm s(-1). These data suggest a method by which nature can evolve a varied mechanical response from a limited number of topologies and demonstrate a generic but facile method by which the mechanical strength of proteins can be rationally modified.

摘要

蛋白质及其复合物承受或响应机械刺激的能力对于细胞维持其结构组织、传递外部信号以及促进展开和重塑至关重要。使用原子力显微镜的力谱技术能够研究单个蛋白质分子在施加拉伸下的行为,并对其机械强度进行量化。蛋白质L是一种简单的模型蛋白质,具有适度的机械强度,被认为是通过两个机械亚结构域的剪切而展开。在这里,我们通过测量一系列含有单个保守疏水体积缺失突变体的蛋白质L变体的机械强度,研究侧链堆积对蛋白质L机械强度的重要性。在所表征的五个热力学不稳定变体中,仅发现靠近两个机械亚结构域之间界面的一个残基(I60V)的机械性能与野生型不同(在447 nm s(-1) 时,ΔF(I60V-WT) = -36 pN,Δx(uI60V-WT) = 0.2 nm)。对展开数据的Phi值分析揭示了一个高度天然的过渡态。为了测试跨机械界面的疏水接触数量是否确实影响蛋白质L的机械强度,我们测量了另外两个变体的机械性能。蛋白质L L10F增加了核心堆积但未增强界面接触,在447 nm s(-1) 时机械强度增加了13±11 pN。相比之下,蛋白质L I60F增加了核心和跨界面接触,在447 nm s(-1) 时机械强度增加了72±13 pN。这些数据提出了一种自然能够从有限数量的拓扑结构中演化出多样机械响应的方法,并展示了一种通用但简便的方法,通过该方法可以合理修饰蛋白质的机械强度。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6734/2796179/c8cc231432a0/gr1.jpg

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