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栖菜新黄单胞菌,从鹰嘴豆根瘤中分离得到。

Ochrobactrum ciceri sp. nov., isolated from nodules of Cicer arietinum.

机构信息

National Institute for Biotechnology and Genetic Engineering (NIBGE), PO Box 577, Jhang Road, Faisalabad, Pakistan.

DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Inhoffenstrasse 7B, 38124 Braunschweig, Germany.

出版信息

Int J Syst Evol Microbiol. 2010 Jul;60(Pt 7):1548-1553. doi: 10.1099/ijs.0.013987-0. Epub 2009 Aug 14.

Abstract

A Gram-staining-negative, aerobic, rod-shaped, non-spore-forming bacterial strain, Ca-34(T), was isolated from nodules of chickpea (Cicer arietinum) in Pakistan and studied for its taxonomic affiliation. The almost full-length 16S rRNA gene sequence showed highest similarities to those of strains of the genus Ochrobactrum. Based on results of MALDI-TOF MS and 16S rRNA gene sequence similarity (98.6 %), strain Ca-34(T) and Ochrobactrum intermedium LMG 3301(T) are phylogenetic neighbours; the two strains shared DNA-DNA relatedness of 64 %. The fatty acid profile [predominantly C(18 : 1)omega7c (67.7 %) and C(19 : 0) cyclo omega8c (19.6 %)] also supported the genus affiliation. Metabolically, strain Ca-34(T) differed from other type strains of Ochrobactrum in many reactions and from all type strains in testing positive for gelatin hydrolysis and in testing negative for assimilation of alaninamide and l-threonine. Based on phenotypic and genotypic data, we conclude that strain Ca-34(T) represents a novel species, for which we propose the name Ochrobactrum ciceri sp. nov. (type strain Ca-34(T) =DSM 22292(T) =CCUG 57879(T)).

摘要

一株革兰氏阴性、需氧、杆状、不产芽孢的细菌菌株 Ca-34(T) 从巴基斯坦鹰嘴豆(Cicer arietinum)的根瘤中分离出来,并对其分类归属进行了研究。其近乎全长的 16S rRNA 基因序列与 Ochrobactrum 属的菌株最为相似。基于 MALDI-TOF MS 和 16S rRNA 基因序列相似性(98.6%)的结果,菌株 Ca-34(T) 和 Ochrobactrum intermedium LMG 3301(T) 是系统发育上的近缘种;两菌株的 DNA-DNA 同源性为 64%。脂肪酸图谱(主要为 C(18:1)omega7c(67.7%)和 C(19:0)cyclo omega8c(19.6%))也支持其属的归属。在代谢方面,菌株 Ca-34(T) 在许多反应中与其他 Ochrobactrum 模式菌株不同,并且在明胶水解测试呈阳性,而在丙氨酸酰胺和 l-苏氨酸同化测试中呈阴性,这与所有模式菌株不同。基于表型和基因型数据,我们得出结论,菌株 Ca-34(T) 代表一个新的物种,我们提议将其命名为 Ochrobactrum ciceri sp. nov.(模式菌株 Ca-34(T)=DSM 22292(T)=CCUG 57879(T))。

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