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去氘蛋白中可交换质子的最佳水平,用于 MAS 固态 NMR 光谱法中的质子检测。

Optimum levels of exchangeable protons in perdeuterated proteins for proton detection in MAS solid-state NMR spectroscopy.

机构信息

Leibniz-Forschungsinstitut für Molekulare Pharmakologie, Berlin, Germany.

出版信息

J Biomol NMR. 2010 Jan;46(1):67-73. doi: 10.1007/s10858-009-9369-0. Epub 2009 Aug 22.

Abstract

We present a systematic study of the effect of the level of exchangeable protons on the observed amide proton linewidth obtained in perdeuterated proteins. Decreasing the amount of D(2)O employed in the crystallization buffer from 90 to 0%, we observe a fourfold increase in linewidth for both (1)H and (15)N resonances. At the same time, we find a gradual increase in the signal-to-noise ratio (SNR) for (1)H-(15)N correlations in dipolar coupling based experiments for H(2)O concentrations of up to 40%. Beyond 40%, a significant reduction in SNR is observed. Scalar-coupling based (1)H-(15)N correlation experiments yield a nearly constant SNR for samples prepared with < or =30% H(2)O. Samples in which more H(2)O is employed for crystallization show a significantly reduced NMR intensity. Calculation of the SNR by taking into account the reduction in (1)H T (1) in samples containing more protons (SNR per unit time), yields a maximum SNR for samples crystallized using 30 and 40% H(2)O for scalar and dipolar coupling based experiments, respectively. A sensitivity gain of 3.8 is obtained by increasing the H(2)O concentration from 10 to 40% in the CP based experiment, whereas the linewidth only becomes 1.5 times broader. In general, we find that CP is more favorable compared to INEPT based transfer when the number of possible (1)H,(1)H interactions increases. At low levels of deuteration (> or =60% H(2)O in the crystallization buffer), resonances from rigid residues are broadened beyond detection. All experiments are carried out at MAS frequency of 24 kHz employing perdeuterated samples of the chicken alpha-spectrin SH3 domain.

摘要

我们对可交换质子水平对在去氘化蛋白质中观察到的酰胺质子线宽的影响进行了系统研究。我们将结晶缓冲液中的 D2O 用量从 90%减少到 0%,发现(1)H 和(15)N 共振的线宽增加了四倍。与此同时,我们发现,在 H2O 浓度高达 40%的情况下,基于偶极耦合的(1)H-(15)N 相关实验的信号与噪声比(SNR)逐渐增加。超过 40%后,SNR 会显著降低。基于标量耦合的(1)H-(15)N 相关实验对于用 <或=30%H2O 制备的样品,SNR 几乎保持不变。对于用更多 H2O 进行结晶的样品,NMR 强度会显著降低。通过考虑包含更多质子的样品中(1)H T1 的减少(单位时间内的 SNR)来计算 SNR,对于基于标量和偶极耦合的实验,分别使用 30%和 40%的 H2O 结晶的样品可获得最大 SNR。通过将 H2O 浓度从 10%增加到 40%,在基于 CP 的实验中可获得 3.8 的灵敏度增益,而线宽仅增加 1.5 倍。一般来说,我们发现当可能的(1)H,(1)H 相互作用的数量增加时,与基于 INEPT 的转移相比,CP 更有利。在低氘化水平(>或=60%的结晶缓冲液中的 H2O)下,刚性残基的共振线宽变得无法检测。所有实验均在 24 kHz 的 MAS 频率下进行,使用鸡 alpha- spectrin SH3 结构域的全氘化样品。

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