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使用MAS固态核磁共振光谱对蛋白质中主链运动进行定量分析。

Quantitative analysis of backbone motion in proteins using MAS solid-state NMR spectroscopy.

作者信息

Chevelkov Veniamin, Fink Uwe, Reif Bernd

机构信息

Leibniz-Forschungsinstitut für Molekulare Pharmakologie, Robert-Rössle-Strasse 10, Berlin, Germany.

出版信息

J Biomol NMR. 2009 Sep;45(1-2):197-206. doi: 10.1007/s10858-009-9348-5. Epub 2009 Jul 24.

Abstract

We present a comprehensive analysis of protein dynamics for a micro-crystallin protein in the solid-state. Experimental data include (15)N T (1) relaxation times measured at two different magnetic fields as well as (1)H-(15)N dipole, (15)N CSA cross correlated relaxation rates which are sensitive to the spectral density function J(0) and are thus a measure of T (2) in the solid-state. In addition, global order parameters are included from a (1)H,(15)N dipolar recoupling experiment. The data are analyzed within the framework of the extended model-free Clore-Lipari-Szabo theory. We find slow motional correlation times in the range of 5 and 150 ns. Assuming a wobbling in a cone motion, the amplitude of motion of the respective amide moiety is on the order of 10 degrees for the half-opening angle of the cone in most of the cases. The experiments are demonstrated using a perdeuterated sample of the chicken alpha-spectrin SH3 domain.

摘要

我们对固态微晶蛋白的蛋白质动力学进行了全面分析。实验数据包括在两个不同磁场下测量的(15)N T(1)弛豫时间,以及对光谱密度函数J(0)敏感的(1)H-(15)N偶极、(15)N CSA交叉相关弛豫率,因此是固态中T(2)的一种度量。此外,全局序参量来自(1)H、(15)N偶极重耦合实验。数据在扩展的无模型Clore-Lipari-Szabo理论框架内进行分析。我们发现慢运动相关时间在5到150纳秒范围内。假设为圆锥内摆动运动,在大多数情况下,对于圆锥的半开角,相应酰胺部分的运动幅度约为10度。实验使用鸡α-血影蛋白SH3结构域的全氘代样品进行演示。

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