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苯乙醇胺N-甲基转移酶的反应机制:一项密度泛函理论研究

The reaction mechanism of phenylethanolamine N-methyltransferase: a density functional theory study.

作者信息

Georgieva Polina, Wu Qian, McLeish Michael J, Himo Fahmi

机构信息

Department of Theoretical Chemistry, School of Biotechnology, Royal Institute of Technology, SE-106 91 Stockholm, Sweden.

出版信息

Biochim Biophys Acta. 2009 Dec;1794(12):1831-7. doi: 10.1016/j.bbapap.2009.08.022. Epub 2009 Sep 3.

Abstract

Hybrid density functional theory methods were used to investigate the reaction mechanism of human phenylethanolamine N-methyltransferase (hPNMT). This enzyme catalyzes the S-adenosyl-L-methionine-dependent conversion of norepinephrine to epinephrine, which constitutes the terminal step in the catecholamine biosynthesis. Several models of the active site were constructed based on the X-ray structure. Geometries of the stationary points along the reaction path were optimized and the reaction barrier and energy were calculated and compared to the experimental values. The calculations demonstrate that the reaction takes place via an SN2 mechanism with methyl transfer being rate-limiting, a suggestion supported by mutagenesis studies. Optimal agreement with experimental data is reached using a model in which both active site glutamates are protonated. Overall, the mechanism of hPNMT is more similar to those of catechol O-methyltransferase and glycine N-methyltransferase than to that of guanidinoacetate N-methyltransferase in which methyl transfer is coupled to proton transfer.

摘要

采用杂化密度泛函理论方法研究了人苯乙醇胺N-甲基转移酶(hPNMT)的反应机制。该酶催化去甲肾上腺素依赖S-腺苷-L-甲硫氨酸转化为肾上腺素,这是儿茶酚胺生物合成的终末步骤。基于X射线结构构建了几个活性位点模型。优化了反应路径上驻点的几何结构,计算了反应势垒和能量,并与实验值进行了比较。计算结果表明,该反应通过SN2机制进行,甲基转移是限速步骤,这一观点得到了诱变研究的支持。使用两个活性位点谷氨酸均被质子化的模型,与实验数据达到了最佳吻合。总体而言,hPNMT的机制与儿茶酚O-甲基转移酶和甘氨酸N-甲基转移酶的机制比与胍基乙酸N-甲基转移酶的机制更相似,在胍基乙酸N-甲基转移酶中甲基转移与质子转移偶联。

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