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ParM细丝的结构多态性与动态不稳定性。

Structural polymorphism of the ParM filament and dynamic instability.

作者信息

Galkin Vitold E, Orlova Albina, Rivera Chris, Mullins R Dyche, Egelman Edward H

机构信息

Department of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22908-0733, USA.

出版信息

Structure. 2009 Sep 9;17(9):1253-64. doi: 10.1016/j.str.2009.07.008.

Abstract

Segregation of the R1 plasmid in bacteria relies on ParM, an actin homolog that segregates plasmids by switching between cycles of polymerization and depolymerization. We find similar polymerization kinetics and stability in the presence of either ATP or GTP and a 10-fold affinity preference for ATP over GTP. We used electron cryo-microscopy to evaluate the heterogeneity within ParM filaments. In addition to variable twist, ParM has variable axial rise, and both parameters are coupled. Subunits in the same ParM filaments can exist in two different structural states, with the nucleotide-binding cleft closed or open, and the bound nucleotide biases the distribution of states. The interface between protomers is different between these states, and in neither state is it similar to F-actin. Our results suggest that the closed state of the cleft is required but not sufficient for ParM polymerization, and provide a structural basis for the dynamic instability of ParM filaments.

摘要

细菌中R1质粒的分离依赖于ParM,一种肌动蛋白同源物,它通过在聚合和解聚循环之间切换来分离质粒。我们发现在存在ATP或GTP的情况下,ParM具有相似的聚合动力学和稳定性,并且对ATP的亲和力比对GTP高10倍。我们使用冷冻电子显微镜来评估ParM丝内的异质性。除了可变的扭曲外,ParM还具有可变的轴向上升,并且这两个参数是相关联的。同一ParM丝中的亚基可以存在于两种不同的结构状态,核苷酸结合裂隙闭合或开放,并且结合的核苷酸会影响状态的分布。在这些状态之间,原聚体之间的界面是不同的,并且在这两种状态下都与F-肌动蛋白不同。我们的结果表明,裂隙的闭合状态对于ParM聚合是必需的,但不是充分的,并为ParM丝的动态不稳定性提供了结构基础。

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本文引用的文献

1
The structure and assembly dynamics of plasmid actin AlfA imply a novel mechanism of DNA segregation.
J Bacteriol. 2009 Oct;191(20):6219-30. doi: 10.1128/JB.00676-09. Epub 2009 Aug 7.
2
The nature of the globular- to fibrous-actin transition.
Nature. 2009 Jan 22;457(7228):441-5. doi: 10.1038/nature07685.
3
Dynamic stabilization of actin filaments.
Proc Natl Acad Sci U S A. 2008 Oct 28;105(43):16531-6. doi: 10.1073/pnas.0807394105. Epub 2008 Oct 17.
4
Evolution of cytomotive filaments: the cytoskeleton from prokaryotes to eukaryotes.
Int J Biochem Cell Biol. 2009 Feb;41(2):323-9. doi: 10.1016/j.biocel.2008.08.010. Epub 2008 Aug 13.
5
Protein-nanocrystal conjugates support a single filament polymerization model in R1 plasmid segregation.
J Biol Chem. 2008 Oct 17;283(42):28081-6. doi: 10.1074/jbc.M803833200. Epub 2008 Jul 24.
6
Bacterial actin: architecture of the ParMRC plasmid DNA partitioning complex.
EMBO J. 2008 Aug 20;27(16):2230-8. doi: 10.1038/emboj.2008.152. Epub 2008 Jul 24.
7
High-resolution cryo-EM structure of the F-actin-fimbrin/plastin ABD2 complex.
Proc Natl Acad Sci U S A. 2008 Feb 5;105(5):1494-8. doi: 10.1073/pnas.0708667105. Epub 2008 Jan 30.
8
Molecular structure of the ParM polymer and the mechanism leading to its nucleotide-driven dynamic instability.
EMBO J. 2008 Feb 6;27(3):570-9. doi: 10.1038/sj.emboj.7601978. Epub 2008 Jan 10.
9
In vivo visualization of type II plasmid segregation: bacterial actin filaments pushing plasmids.
J Cell Biol. 2007 Dec 3;179(5):1059-66. doi: 10.1083/jcb.200708206. Epub 2007 Nov 26.
10
Actin structure and function: what we still do not understand.
J Biol Chem. 2007 Dec 14;282(50):36133-7. doi: 10.1074/jbc.R700030200. Epub 2007 Oct 26.

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