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一种从DNA中分离交联核苷的方法:应用于亚硝酸诱导的交联

A method for the isolation of cross-linked nucleosides from DNA: application to cross-links induced by nitrous acid.

作者信息

Dubelman S, Shapiro R

出版信息

Nucleic Acids Res. 1977 Jun;4(6):1815-27. doi: 10.1093/nar/4.6.1815.

DOI:10.1093/nar/4.6.1815
PMID:197494
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC342524/
Abstract

A procedure is reported for the isolation of cross-linked nucleosides from nitrous acid-treated calf thymus DNA. Cross-linked DNA was hydrolyzed enzymatically with deoxyribonuclease I and snake venom phosphodiesterase and fractionated on a DEAE-Sephadex column. After desalting, the fractions were characterized by ultraviolet spectroscopy, anion exchange high pressure liquid chromatography, gel filtration, and two dimensional thin layer chromatography. A cross-linked dinucleotide, and a series of oligonucleotides were isolated. The oligomers, which had resisted digestion by the above enzyme system, were digested to the nucleoside level by a spleen phosphodiesterase-alkaline phosphatase combination. A second cross-linked product was isolated from this mixture. The cross-linked nucleosides were less than 0.17% of the total nucleotides of the DNA. The methods developed here are recommended for the isolation of products from DNA treated with other cross-linking agents.

摘要

本文报道了一种从亚硝酸处理的小牛胸腺DNA中分离交联核苷的方法。交联DNA用脱氧核糖核酸酶I和蛇毒磷酸二酯酶进行酶解,并在DEAE-葡聚糖凝胶柱上进行分离。脱盐后,通过紫外光谱、阴离子交换高压液相色谱、凝胶过滤和二维薄层色谱对各馏分进行表征。分离出一种交联二核苷酸和一系列寡核苷酸。这些抗上述酶系统消化的寡聚物,通过脾磷酸二酯酶-碱性磷酸酶联合作用消化至核苷水平。从该混合物中分离出第二种交联产物。交联核苷占DNA总核苷酸的比例不到0.17%。本文开发的方法推荐用于从用其他交联剂处理的DNA中分离产物。

相似文献

1
A method for the isolation of cross-linked nucleosides from DNA: application to cross-links induced by nitrous acid.一种从DNA中分离交联核苷的方法:应用于亚硝酸诱导的交联
Nucleic Acids Res. 1977 Jun;4(6):1815-27. doi: 10.1093/nar/4.6.1815.
2
Enzymatic digestion of DNA gamma-irradiated in aqueous solution separation of the digests by ion-exchange chromatography.对水溶液中经γ射线辐照的DNA进行酶促消化,通过离子交换色谱法分离消化产物。
Int J Radiat Biol Relat Stud Phys Chem Med. 1978 Jun;33(6):563-9. doi: 10.1080/09553007814550471.
3
Composition of the 3'-phosphate penultimate nucleotides released from calf-thymus DNA by spleen acid DNAase.脾脏酸性DNA酶从牛胸腺DNA释放的3'-磷酸倒数第二个核苷酸的组成。
Eur J Biochem. 1973 Oct 18;38(3):416-22. doi: 10.1111/j.1432-1033.1973.tb03075.x.
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Separation of small DNA and RNA oligonucleotides by high-performance anion-exchange liquid chromatography.通过高效阴离子交换液相色谱法分离小DNA和RNA寡核苷酸。
J Chromatogr. 1979 Apr 1;171:321-30. doi: 10.1016/s0021-9673(01)95311-7.
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[Preparative isolation of tetra-, penta- and hexapurine oligonucleotides from partial hydrolysates of depyrimidinated herring sperm DNA].[从脱嘧啶鲱鱼精DNA的部分水解产物中制备分离四、五和六聚嘌呤寡核苷酸]
J Chromatogr. 1984 Feb 3;284(2):381-407. doi: 10.1016/s0021-9673(01)87842-0.
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Phosphopeptides in highly purified calf thymus DNA.高纯度小牛胸腺DNA中的磷酸肽
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Preparation and enzymatic hydrolysis of dinucleoside monophosphates and DNA modified with aromatic residues.含芳香族残基修饰的二磷酸核苷及DNA的制备与酶促水解
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Affect of spleen and snake venom phosphodiesterases on nucleotides containing nucleosides in the syn conformation.脾脏和蛇毒磷酸二酯酶对处于顺式构象的含核苷核苷酸的影响。
Biochem Biophys Res Commun. 1976 Jan 26;68(2):375-8. doi: 10.1016/0006-291x(76)91155-4.
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Studies on bovine pancreatic deoxyribonuclease A. II. The effect of different bivalent metals on the specificity of degradation of DNA.牛胰脱氧核糖核酸酶A的研究。II. 不同二价金属对DNA降解特异性的影响。
Biochim Biophys Acta. 1973 Jun 8;312(1):85-102.
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Determination of pseudouridine in tRNA and in acid-soluble tissue extracts by high-performance liquid chromatography.用高效液相色谱法测定tRNA和酸溶性组织提取物中的假尿苷。
J Chromatogr. 1984 Jul 27;296:387-93. doi: 10.1016/s0021-9673(01)96433-7.

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Nitrous acid damage to duplex deoxyribonucleic acid: distinction between deamination of cytosine residues and a novel mutational lesion.亚硝酸对双链脱氧核糖核酸的损伤:胞嘧啶残基脱氨基作用与一种新型突变损伤之间的区别。
J Bacteriol. 1980 Apr;142(1):335-8. doi: 10.1128/jb.142.1.335-338.1980.
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Interaction of mutagenic spermidine-nitrous acid reaction products with uvr- and recA-dependent repair systems in Salmonella.鼠伤寒沙门氏菌中诱变亚精胺-亚硝酸反应产物与uvr和recA依赖性修复系统的相互作用
J Bacteriol. 1980 Apr;142(1):191-5. doi: 10.1128/jb.142.1.191-195.1980.
5
Toxicokinetics and molecular interaction of [14C]-formaldehyde in rats.[14C] -甲醛在大鼠体内的毒代动力学及分子相互作用
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本文引用的文献

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The reaction of mono- and di-functional alkylating agents with nucleic acids.单官能和双官能烷基化剂与核酸的反应。
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Desalting of mono- and oligonucleotides.单核苷酸和寡核苷酸的脱盐
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