Entomology Department, Swedish Museum of Natural History, Box 50007, SE-104 05 Stockholm, Sweden.
Mol Phylogenet Evol. 2010 Feb;54(2):535-41. doi: 10.1016/j.ympev.2009.09.025. Epub 2009 Sep 26.
Calocidae constitute a hypothesised monophyletic group of caddisflies (Trichoptera) being geographically restricted to New Zealand (one genus) and Australia (five genera). This analysis tests the monophyly of the family based on sequences from five different molecular genes. The complete data set includes 29 species and covers a complete genus representation of the Calocidae as well as representatives of other families in which one or more calocid genera have been classified. Sequences from two mitochondrial (cytochrome oxidase I and 16S) and three nuclear (elongation factor 1-alpha, RNA polymerase-II, and Cadherin) genes were used, resulting in a 3958bp data set and 37.1% parsimony informative characters. The Cadherin (CAD) and RNA polymerase-II (POL-II) genes are used for the first time for revealing Trichoptera phylogenies. The character matrix was analyzed by using maximum parsimony (MP) and Bayesian criteria, the latter by applying three different partition strategies for comparison. Two most parsimonious trees were found, differing in the position of one clade within the sister-group to a monophyletic Calocidae. The Bayesian tree based on the maximum number of partitions differs from trees based on a reduced partition analysis with respect to taxa outside the current circumscription of Calocidae. Both the MP and Bayesian analyses left Calocidae monophyletic, with a monophyletic clade of all Australian genera being sister-group to the New Zealand genus. The results from the agreement subtree analysis demonstrates that CAD performs well both separately and in combination with other genes and adds substantial resolution to the calocid phylogeny in a combined MP analysis.
叶䗩科是一个假设的单系毛翅目(Trichoptera)科,地理上仅限于新西兰(一个属)和澳大利亚(五个属)。本分析基于来自五个不同分子基因的序列来检验该科的单系性。完整数据集包括 29 个物种,涵盖了叶䗩科的完整属代表以及其他科的代表,其中一个或多个叶䗩属已被分类。使用了两个线粒体(细胞色素氧化酶 I 和 16S)和三个核(延伸因子 1-α、RNA 聚合酶-II 和 Cadherin)基因的序列,得到了一个 3958bp 的数据集和 37.1%的简约信息字符。Cadherin(CAD)和 RNA 聚合酶-II(POL-II)基因首次用于揭示毛翅目系统发育。使用最大简约法(MP)和贝叶斯准则分析字符矩阵,后者通过应用三种不同的分区策略进行比较。发现了两棵最简约树,它们在一个姐妹群内的一个分支的位置不同,该姐妹群是单系的叶䗩科。基于最大分区数的贝叶斯树与基于简化分区分析的树不同,因为前者涉及叶䗩科当前范围之外的分类单元。最大简约法和贝叶斯分析都将叶䗩科作为一个单系,所有澳大利亚属的单系分支是新西兰属的姐妹群。一致性子树分析的结果表明,CAD 无论是单独使用还是与其他基因结合使用,都能很好地发挥作用,并在联合 MP 分析中为叶䗩科的系统发育增加了实质性的分辨率。