Department of Molecular and Cellular Interactions, VIB, Brussels 1050, Belgium.
Protein Sci. 2010 Jan;19(1):190-4. doi: 10.1002/pro.269.
In Staphylococcus aureus thioredoxin (Trx) it has been shown that mutation of the conserved active site tryptophan residue (Trp28) has a large effect on the protein stability, on the pKa of the nucleophilic cysteine and on the redox potential. Since these effects can either be due to the partially unfolding of the Trp28Ala mutant or to the absence of the indole side chain of Trp28 as possible interaction partner for the active site cysteines, the origin of the experimentally observed effects is not known and is beyond experimental approach. With theoretical pKa and density functional theory reactivity analysis on model systems where Trp28 has been replaced by an alanine within the structural environment of Trx it is shown that Trp28 does not affect the redox parameters of Trx. As such, the experimentally observed redox effects of the Trx W28A mutant might be due to structural changes induced by partial unfolding.
在金黄色葡萄球菌硫氧还蛋白(Trx)中,已经表明,保守活性位点色氨酸残基(Trp28)的突变对蛋白质稳定性、亲核半胱氨酸的 pKa 和氧化还原电位有很大影响。由于这些影响要么是由于 Trp28Ala 突变体的部分展开,要么是由于缺乏色氨酸 28 位吲哚侧链作为活性位点半胱氨酸的可能相互作用伙伴,因此实验观察到的影响的起源尚不清楚,也无法通过实验方法来确定。通过对模型系统的理论 pKa 和密度泛函理论反应性分析,其中在 Trx 的结构环境中用丙氨酸取代了 Trp28,表明 Trp28 不会影响 Trx 的氧化还原参数。因此,Trx W28A 突变体的实验观察到的氧化还原效应可能是由于部分展开引起的结构变化所致。