Department of Bioengineering, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
PLoS Comput Biol. 2009 Sep;5(9):e1000518. doi: 10.1371/journal.pcbi.1000518. Epub 2009 Sep 25.
Autoregulation of transcription factors and cross-antagonism between lineage-specific transcription factors are a recurrent theme in cell differentiation. An equally prevalent event that is frequently overlooked in lineage commitment models is the upregulation of lineage-specific receptors, often through lineage-specific transcription factors. Here, we use a minimal model that combines cell-extrinsic and cell-intrinsic elements of regulation in order to understand how both instructive and stochastic events can inform cell commitment decisions in hematopoiesis. Our results suggest that cytokine-mediated positive receptor feedback can induce a "switch-like" response to external stimuli during multilineage differentiation by providing robustness to both bipotent and committed states while protecting progenitors from noise-induced differentiation or decommitment. Our model provides support to both the instructive and stochastic theories of commitment: cell fates are ultimately driven by lineage-specific transcription factors, but cytokine signaling can strongly bias lineage commitment by regulating these inherently noisy cell-fate decisions with complex, pertinent behaviors such as ligand-mediated ultrasensitivity and robust multistability. The simulations further suggest that the kinetics of differentiation to a mature cell state can depend on the starting progenitor state as well as on the route of commitment that is chosen. Lastly, our model shows good agreement with lineage-specific receptor expression kinetics from microarray experiments and provides a computational framework that can integrate both classical and alternative commitment paths in hematopoiesis that have been observed experimentally.
转录因子的自身调控和谱系特异性转录因子之间的交叉拮抗作用是细胞分化中的一个反复出现的主题。在谱系确定模型中经常被忽视的一个同样普遍的事件是谱系特异性受体的上调,通常是通过谱系特异性转录因子。在这里,我们使用一个最小模型,将调节的细胞外和细胞内元素结合起来,以了解指令性和随机事件如何在造血中为细胞确定决策提供信息。我们的结果表明,细胞因子介导的正受体反馈可以通过为双潜能和确定状态提供稳健性,同时保护祖细胞免受噪声诱导的分化或去确定,从而在多谱系分化过程中对外部刺激产生类似于“开关”的反应。我们的模型为指令性和随机性的承诺理论提供了支持:细胞命运最终由谱系特异性转录因子驱动,但细胞因子信号可以通过调节这些固有噪声的细胞命运决策,具有复杂、相关的行为,如配体介导的超敏性和稳健的多稳定性,强烈影响谱系承诺。模拟进一步表明,向成熟细胞状态的分化动力学可能取决于起始祖细胞状态以及所选择的承诺途径。最后,我们的模型与微阵列实验中谱系特异性受体表达动力学很好地吻合,并提供了一个计算框架,可以整合造血中已经观察到的经典和替代承诺途径。