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基于质谱的植物代谢组学方法用于生物标志物发现。

MS-based plant metabolomic approaches for biomarker discovery.

作者信息

Wolfender Jean-Luc, Glauser Gaetan, Boccard Julien, Rudaz Serge

机构信息

Laboratory of Pharmacognosy and Phytochemistry, School of Pharmaceutical Sciences, University of Geneva, University of Lausanne, 30, quai Ernest-Ansermet, CH-1211 Geneva 4, Switzerland.

出版信息

Nat Prod Commun. 2009 Oct;4(10):1417-30.

PMID:19911581
Abstract

Metabolomics, which aims at the comprehensive and quantitative analysis of wide arrays of metabolites in biological samples, is playing an increasingly important role in plant science. Various biological issues have been successfully studied by this holistic approach that includes global metabolite composition assessment, mutant characterization, taxonomy, developmental processes, stress response, interaction with environment, quality control assessment and mode of action of herbal medicine. This review summarizes the main mass spectrometry methods used for performing these studies and discusses the potential, but also the current limitations of the various approaches. The intention is not to cover exhaustively the field, which has considerably grown over about one decade, but to give a brief insight into the methods commonly employed and discuss some applications that reveal the potential of metabolomics in phytochemistry and systems biology.

摘要

代谢组学旨在对生物样品中的大量代谢物进行全面定量分析,在植物科学中发挥着越来越重要的作用。通过这种整体方法,包括全球代谢物组成评估、突变体表型鉴定、分类学、发育过程、应激反应、与环境的相互作用、质量控制评估以及草药的作用方式等各种生物学问题已得到成功研究。本综述总结了用于开展这些研究的主要质谱方法,并讨论了各种方法的潜力以及当前的局限性。目的并非详尽涵盖这个在大约十年间已大幅发展的领域,而是简要介绍常用方法,并探讨一些揭示代谢组学在植物化学和系统生物学中潜力的应用。

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MS-based plant metabolomic approaches for biomarker discovery.基于质谱的植物代谢组学方法用于生物标志物发现。
Nat Prod Commun. 2009 Oct;4(10):1417-30.
2
Plant metabolomics: from holistic data to relevant biomarkers.植物代谢组学:从整体数据到相关生物标志物。
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[Recent advances in metabonomics].[代谢组学的最新进展]
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From exogenous to endogenous: the inevitable imprint of mass spectrometry in metabolomics.从外源性到内源性:质谱在代谢组学中不可避免的印记。
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Metabolomic technologies and their application to the study of plants and plant-host interactions.代谢组学技术及其在植物和植物-宿主相互作用研究中的应用。
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Knowledge discovery in metabolomics: an overview of MS data handling.代谢组学中的知识发现:MS 数据处理概述。
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The expanding role of mass spectrometry in metabolite profiling and characterization.质谱在代谢物谱分析和表征中的作用不断扩大。
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Free radical scavenging activity and comparative metabolic profiling of in vitro cultured and field grown Withania somnifera roots.体外培养与田间种植的睡茄根的自由基清除活性及比较代谢谱分析
PLoS One. 2015 Apr 14;10(4):e0123360. doi: 10.1371/journal.pone.0123360. eCollection 2015.
2
Metabolomics of cereals under biotic stress: current knowledge and techniques.谷物在生物胁迫下的代谢组学:当前的知识和技术。
Front Plant Sci. 2013 Apr 23;4:82. doi: 10.3389/fpls.2013.00082. eCollection 2013.
3
A metabolomics-based strategy for the quality control of traditional chinese medicine: shengmai injection as a case study.
基于代谢组学的中药质量控制策略:以生脉注射液为例。
Evid Based Complement Alternat Med. 2013;2013:836179. doi: 10.1155/2013/836179. Epub 2013 Jan 20.
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Towards automatic metabolomic profiling of high-resolution one-dimensional proton NMR spectra.面向高分辨一维质子 NMR 谱的自动代谢组学分析。
J Biomol NMR. 2011 Apr;49(3-4):307-23. doi: 10.1007/s10858-011-9480-x. Epub 2011 Mar 1.
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Quantifying the labeling and the levels of plant cell wall precursors using ion chromatography tandem mass spectrometry.使用离子色谱串联质谱定量标记和植物细胞壁前体的水平。
Plant Physiol. 2010 Jul;153(3):915-24. doi: 10.1104/pp.110.155713. Epub 2010 May 4.