• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

大肠杆菌N-乙酰-D-神经氨酸裂解酶突变体E192N与丙酮酸复合物的结构,分辨率为1.45埃。

Structure of an Escherichia coli N-acetyl-D-neuraminic acid lyase mutant, E192N, in complex with pyruvate at 1.45 angstrom resolution.

作者信息

Campeotto Ivan, Carr Stephen B, Trinh Chi H, Nelson Adam S, Berry Alan, Phillips Simon E V, Pearson Arwen R

机构信息

Astbury Centre for Structural Molecular Biology, University of Leeds, England.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Nov 1;65(Pt 11):1088-90. doi: 10.1107/S1744309109037403. Epub 2009 Oct 24.

DOI:10.1107/S1744309109037403
PMID:19923724
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2777032/
Abstract

The structure of a mutant variant of Escherichia coli N-acetyl-d-neuraminic acid lyase (NAL), E192N, in complex with pyruvate has been determined in a new crystal form. It crystallized in space group P2(1)2(1)2(1), with unit-cell parameters a = 78.3, b = 108.5, c = 148.3 angstrom. Pyruvate has been trapped in the active site as a Schiff base with the catalytic lysine (Lys165) without the need for reduction. Unlike the previously published crystallization conditions for the wild-type enzyme, in which a mother-liquor-derived sulfate ion is strongly bound in the catalytic pocket, the low-salt conditions described here will facilitate the determination of further E. coli NAL structures in complex with other activesite ligands.

摘要

已通过一种新的晶体形式确定了大肠杆菌N-乙酰-D-神经氨酸裂解酶(NAL)的突变变体E192N与丙酮酸复合物的结构。它在空间群P2(1)2(1)2(1)中结晶,晶胞参数a = 78.3、b = 108.5、c = 148.3埃。丙酮酸作为席夫碱与催化赖氨酸(Lys165)被困在活性位点,无需还原。与先前公布的野生型酶的结晶条件不同,在先前条件下母液衍生的硫酸根离子强烈结合在催化口袋中,此处描述的低盐条件将有助于确定大肠杆菌NAL与其他活性位点配体复合物的更多结构。

相似文献

1
Structure of an Escherichia coli N-acetyl-D-neuraminic acid lyase mutant, E192N, in complex with pyruvate at 1.45 angstrom resolution.大肠杆菌N-乙酰-D-神经氨酸裂解酶突变体E192N与丙酮酸复合物的结构,分辨率为1.45埃。
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Nov 1;65(Pt 11):1088-90. doi: 10.1107/S1744309109037403. Epub 2009 Oct 24.
2
Reaction mechanism of N-acetylneuraminic acid lyase revealed by a combination of crystallography, QM/MM simulation, and mutagenesis.通过晶体学、量子力学/分子力学模拟和诱变相结合揭示N-乙酰神经氨酸裂解酶的反应机制。
ACS Chem Biol. 2014 Apr 18;9(4):1025-32. doi: 10.1021/cb500067z. Epub 2014 Feb 21.
3
Structural insights into substrate specificity in variants of N-acetylneuraminic Acid lyase produced by directed evolution.通过定向进化产生的 N-乙酰神经氨酸裂解酶变体的底物特异性的结构见解。
J Mol Biol. 2010 Nov 19;404(1):56-69. doi: 10.1016/j.jmb.2010.08.008. Epub 2010 Sep 6.
4
Production of N-acetyl-D-neuraminic acid by recombinant whole cells expressing Anabaena sp. CH1 N-acetyl-D-glucosamine 2-epimerase and Escherichia coli N-acetyl-D-neuraminic acid lyase.通过表达鱼腥藻CH1 N-乙酰-D-葡萄糖胺2-表异构酶和大肠杆菌N-乙酰-D-神经氨酸裂解酶的重组全细胞生产N-乙酰-D-神经氨酸
J Biotechnol. 2007 May 1;129(3):453-60. doi: 10.1016/j.jbiotec.2007.01.027. Epub 2007 Feb 9.
5
Structural and Biochemical Characterization of a Copper-Binding Mutant of the Organomercurial Lyase MerB: Insight into the Key Role of the Active Site Aspartic Acid in Hg-Carbon Bond Cleavage and Metal Binding Specificity.有机汞裂解酶MerB的铜结合突变体的结构与生化特性:深入了解活性位点天冬氨酸在汞-碳键裂解和金属结合特异性中的关键作用
Biochemistry. 2016 Feb 23;55(7):1070-81. doi: 10.1021/acs.biochem.5b01298. Epub 2016 Feb 11.
6
Structural basis for substrate specificity and mechanism of N-acetyl-D-neuraminic acid lyase from Pasteurella multocida.多杀巴斯德氏菌 N-乙酰-D-神经氨酸裂解酶的底物特异性和机制的结构基础。
Biochemistry. 2013 Nov 26;52(47):8570-9. doi: 10.1021/bi4011754. Epub 2013 Nov 11.
7
Structural analysis and mutant growth properties reveal distinctive enzymatic and cellular roles for the three major L-alanine transaminases of Escherichia coli.结构分析和突变体生长特性揭示了大肠杆菌三种主要L-丙氨酸转氨酶独特的酶促作用和细胞功能。
PLoS One. 2014 Jul 11;9(7):e102139. doi: 10.1371/journal.pone.0102139. eCollection 2014.
8
The three-dimensional structure of N-acetylneuraminate lyase from Escherichia coli.来自大肠杆菌的N-乙酰神经氨酸裂解酶的三维结构。
Structure. 1994 May 15;2(5):361-9. doi: 10.1016/s0969-2126(00)00038-1.
9
TPR domain of NrfG mediates complex formation between heme lyase and formate-dependent nitrite reductase in Escherichia coli O157:H7.NrfG的TPR结构域介导大肠杆菌O157:H7中血红素裂解酶与甲酸依赖型亚硝酸还原酶之间的复合物形成。
Proteins. 2008 Feb 15;70(3):900-14. doi: 10.1002/prot.21597.
10
Crystal structures of Yersinia enterocolitica salicylate synthase and its complex with the reaction products salicylate and pyruvate.小肠结肠炎耶尔森菌水杨酸合酶及其与反应产物水杨酸和丙酮酸复合物的晶体结构。
J Mol Biol. 2006 Mar 24;357(2):524-34. doi: 10.1016/j.jmb.2005.12.078. Epub 2006 Jan 11.

引用本文的文献

1
Many locks to one key: N-acetylneuraminic acid binding to proteins.一把钥匙开多把锁:N-乙酰神经氨酸与蛋白质的结合
IUCrJ. 2024 Sep 1;11(Pt 5):664-674. doi: 10.1107/S2052252524005360.
2
Crystal structures and kinetics of N-acetylneuraminate lyase from Fusobacterium nucleatum.具核梭杆菌N-乙酰神经氨酸裂解酶的晶体结构与动力学
Acta Crystallogr F Struct Biol Commun. 2018 Nov 1;74(Pt 11):725-732. doi: 10.1107/S2053230X18012992. Epub 2018 Oct 17.
3
Pathological macromolecular crystallographic data affected by twinning, partial-disorder and exhibiting multiple lattices for testing of data processing and refinement tools.存在孪晶、部分无序现象并表现出多个晶格的大分子晶体学病理性数据,用于测试数据处理和精修工具。
Sci Rep. 2018 Oct 5;8(1):14876. doi: 10.1038/s41598-018-32962-6.
4
Reaction mechanism of N-acetylneuraminic acid lyase revealed by a combination of crystallography, QM/MM simulation, and mutagenesis.通过晶体学、量子力学/分子力学模拟和诱变相结合揭示N-乙酰神经氨酸裂解酶的反应机制。
ACS Chem Biol. 2014 Apr 18;9(4):1025-32. doi: 10.1021/cb500067z. Epub 2014 Feb 21.
5
Structural basis for substrate specificity and mechanism of N-acetyl-D-neuraminic acid lyase from Pasteurella multocida.多杀巴斯德氏菌 N-乙酰-D-神经氨酸裂解酶的底物特异性和机制的结构基础。
Biochemistry. 2013 Nov 26;52(47):8570-9. doi: 10.1021/bi4011754. Epub 2013 Nov 11.
6
Structural insights into the recovery of aldolase activity in N-acetylneuraminic acid lyase by replacement of the catalytically active lysine with γ-thialysine by using a chemical mutagenesis strategy.通过使用化学诱变策略,用γ-噻丙氨酸替代具有催化活性的赖氨酸,研究 N-乙酰神经氨酸酶恢复醛缩酶活性的结构见解。
Chembiochem. 2013 Mar 4;14(4):474-81. doi: 10.1002/cbic.201200714. Epub 2013 Feb 18.
7
X-ray-excited optical luminescence of protein crystals: a new tool for studying radiation damage during diffraction data collection.蛋白质晶体的X射线激发光学发光:一种在衍射数据收集过程中研究辐射损伤的新工具。
Acta Crystallogr D Biol Crystallogr. 2012 May;68(Pt 5):505-10. doi: 10.1107/S0907444912002946. Epub 2012 Apr 17.
8
Molecular characterization of a novel N-acetylneuraminate lyase from Lactobacillus plantarum WCFS1.从植物乳杆菌 WCFS1 中鉴定一种新型 N-乙酰神经氨酸裂解酶。
Appl Environ Microbiol. 2011 Apr;77(7):2471-8. doi: 10.1128/AEM.02927-10. Epub 2011 Feb 11.
9
Structural insights into substrate specificity in variants of N-acetylneuraminic Acid lyase produced by directed evolution.通过定向进化产生的 N-乙酰神经氨酸裂解酶变体的底物特异性的结构见解。
J Mol Biol. 2010 Nov 19;404(1):56-69. doi: 10.1016/j.jmb.2010.08.008. Epub 2010 Sep 6.

本文引用的文献

1
Crystal structure and stereochemical studies of KD(P)G aldolase from Thermoproteus tenax.嗜热栖热菌1,7-二磷酸景天庚酮糖醛缩酶的晶体结构和立体化学研究。
Proteins. 2008 Jul;72(1):35-43. doi: 10.1002/prot.21890.
2
The war against influenza: discovery and development of sialidase inhibitors.对抗流感之战:唾液酸酶抑制剂的发现与研发
Nat Rev Drug Discov. 2007 Dec;6(12):967-74. doi: 10.1038/nrd2400.
3
MolProbity: all-atom contacts and structure validation for proteins and nucleic acids.MolProbity:蛋白质和核酸的全原子接触与结构验证
Nucleic Acids Res. 2007 Jul;35(Web Server issue):W375-83. doi: 10.1093/nar/gkm216. Epub 2007 Apr 22.
4
Solving structures of protein complexes by molecular replacement with Phaser.使用Phaser通过分子置换法解析蛋白质复合物的结构。
Acta Crystallogr D Biol Crystallogr. 2007 Jan;63(Pt 1):32-41. doi: 10.1107/S0907444906045975. Epub 2006 Dec 13.
5
Scaling and assessment of data quality.数据质量的评估与分级
Acta Crystallogr D Biol Crystallogr. 2006 Jan;62(Pt 1):72-82. doi: 10.1107/S0907444905036693. Epub 2005 Dec 14.
6
The integration of macromolecular diffraction data.大分子衍射数据的整合
Acta Crystallogr D Biol Crystallogr. 2006 Jan;62(Pt 1):48-57. doi: 10.1107/S0907444905039107. Epub 2005 Dec 14.
7
Structure-guided saturation mutagenesis of N-acetylneuraminic acid lyase for the synthesis of sialic acid mimetics.用于合成唾液酸模拟物的N-乙酰神经氨酸裂解酶的结构导向饱和诱变
Protein Eng Des Sel. 2005 May;18(5):239-46. doi: 10.1093/protein/gzi027. Epub 2005 May 16.
8
Coot: model-building tools for molecular graphics.Coot:分子图形的模型构建工具。
Acta Crystallogr D Biol Crystallogr. 2004 Dec;60(Pt 12 Pt 1):2126-32. doi: 10.1107/S0907444904019158. Epub 2004 Nov 26.
9
Refinement of macromolecular structures by the maximum-likelihood method.用最大似然法优化大分子结构。
Acta Crystallogr D Biol Crystallogr. 1997 May 1;53(Pt 3):240-55. doi: 10.1107/S0907444996012255.
10
The structural basis for substrate promiscuity in 2-keto-3-deoxygluconate aldolase from the Entner-Doudoroff pathway in Sulfolobus solfataricus.嗜热栖热菌中Entner-Doudoroff途径的2-酮-3-脱氧葡萄糖酸醛缩酶底物选择性的结构基础。
J Biol Chem. 2004 Oct 15;279(42):43886-92. doi: 10.1074/jbc.M407702200. Epub 2004 Jul 20.