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瞬态动力学同位素效应第二规则在酶机制中的应用。

Application of the second rule of transient-state kinetic isotope effects to an enzymatic mechanism.

机构信息

The Department of Biochemistry, University of Kansas Medical Center, 3901 Rainbow Boulevard, Kansas City, Kansas 66160, USA.

出版信息

Biochemistry. 2009 Dec 29;48(51):12265-71. doi: 10.1021/bi901514h.

DOI:10.1021/bi901514h
PMID:19924903
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2907749/
Abstract

The transient-state kinetic approach reveals the formation and subsequent interconversions of intermediates in real time. Its potential for the mechanistic resolution of enzymatic and other complex chemical mechanisms has been severely limited however by the lack of a rigorous and applicable theoretical basis in contrast to that of the less direct but soundly based algebraic algorithms of the steady-state approach. Having recently established three rigorously derived fundamental "rules" of transient-state kinetics applicable to realistic multiple step reactions, we present here the successful application of the very counterintuitive "second rule" to the resolution of the mechanism of the l-phenylalanine dehydrogenase catalyzed reaction.

摘要

瞬态动力学方法能够实时揭示中间产物的形成和后续转化。然而,与稳态方法中基于代数算法的间接但可靠的理论基础相比,瞬态动力学方法缺乏严格适用的理论基础,这极大地限制了其在酶促反应和其他复杂化学反应机制的机理解析方面的应用。最近,我们建立了三个严格推导的瞬态动力学基本“规则”,适用于实际的多步反应,在此,我们成功地将非常违反直觉的“第二规则”应用于解析 l-苯丙氨酸脱氢酶催化反应的机制。

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引用本文的文献

1
The application of transient-state kinetic isotope effects to the resolution of mechanisms of enzyme-catalyzed reactions.瞬态动力学同位素效应在酶催化反应机制解析中的应用。
Molecules. 2013 Jul 12;18(7):8230-42. doi: 10.3390/molecules18078230.

本文引用的文献

1
Relationship between the time-dependence of a transient-state kinetic isotope effect and the location of complexes in a reaction sequence.瞬态动力学同位素效应的时间依赖性与反应序列中络合物位置之间的关系。
J Phys Chem A. 2006 Apr 6;110(13):4465-72. doi: 10.1021/jp057254x.
2
Transient-state kinetic approach to mechanisms of enzymatic catalysis.酶催化机制的瞬态动力学方法。
Acc Chem Res. 2005 Mar;38(3):157-66. doi: 10.1021/ar040218g.
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The interpretation of multiple-step transient-state kinetic isotope effects.多步瞬态动力学同位素效应的解释
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Detection of multiple active site domain motions in transient-state component time courses of the Clostridium symbiosum L-glutamate dehydrogenase-catalyzed oxidative deamination reaction.共生梭菌L-谷氨酸脱氢酶催化的氧化脱氨反应瞬态组分时间进程中多个活性位点结构域运动的检测
Biochemistry. 2002 Sep 17;41(37):11284-93. doi: 10.1021/bi0202068.
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Rhodococcus L-phenylalanine dehydrogenase: kinetics, mechanism, and structural basis for catalytic specificity.
Biochemistry. 2000 Aug 8;39(31):9174-87. doi: 10.1021/bi000494c.
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The location of active site opening and closing events in the prehydride transfer phase of the oxidative deamination reaction catalyzed by bovine liver glutamate dehydrogenase using a novel pH jump approach.
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Identification and characterization of kinetically competent carbinolamine and alpha-iminoglutarate complexes in the glutamate dehydrogenase-catalyzed oxidation of L-glutamate using a multiwavelength transient state approach.使用多波长瞬态方法对谷氨酸脱氢酶催化L-谷氨酸氧化过程中具有动力学活性的甲醇胺和α-亚氨基戊二酸复合物进行鉴定和表征。
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