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炭疽杆菌脯氨酰 4-羟化酶的晶体结构。

Crystal structure of prolyl 4-hydroxylase from Bacillus anthracis.

机构信息

Department of Chemistry, University of Kansas, 1251 Wescoe Hall Drive, Lawrence, Kansas 66045, USA.

出版信息

Biochemistry. 2010 Jan 12;49(1):124-33. doi: 10.1021/bi901771z.

Abstract

Prolyl 4-hydroxylases (P4H) catalyze the post-translational hydroxylation of proline residues and play a role in collagen production, hypoxia response, and cell wall development. P4Hs belong to the group of Fe(II)/alphaKG oxygenases and require Fe(II), alpha-ketoglutarate (alphaKG), and O(2) for activity. We report the 1.40 A structure of a P4H from Bacillus anthracis, the causative agent of anthrax, whose immunodominant exosporium protein BclA contains collagen-like repeat sequences. The structure reveals the double-stranded beta-helix core fold characteristic of Fe(II)/alphaKG oxygenases. This fold positions Fe-binding and alphaKG-binding residues in what is expected to be catalytically competent orientations and is consistent with proline peptide substrate binding at the active site mouth. Comparisons of the anthrax P4H structure with Cr P4H-1 structures reveal similarities in a peptide surface groove. However, sequence and structural comparisons suggest differences in conformation of adjacent loops may change the interaction with peptide substrates. These differences may be the basis of a substantial disparity between the K(M) values for the Cr P4H-1 compared to the anthrax and human P4H enzymes. Additionally, while previous structures of P4H enzymes are monomers, B. anthracis P4H forms an alpha(2) homodimer and suggests residues important for interactions between the alpha(2) subunits of alpha(2)beta(2) human collagen P4H. Thus, the anthrax P4H structure provides insight into the structure and function of the alpha-subunit of human P4H, which may aid in the development of selective inhibitors of the human P4H enzyme involved in fibrotic disease.

摘要

脯氨酰 4-羟化酶(P4H)催化脯氨酸残基的翻译后羟化作用,在胶原蛋白生成、低氧反应和细胞壁发育中发挥作用。P4H 属于 Fe(II)/αKG 加氧酶组,需要 Fe(II)、α-酮戊二酸(αKG)和 O2 才能发挥活性。我们报告了炭疽病病原体炭疽芽孢杆菌的 P4H 的 1.40Å 结构,其免疫显性外孢子蛋白 BclA 含有胶原样重复序列。该结构揭示了 Fe(II)/αKG 加氧酶的双链β-螺旋核心折叠。这种折叠将 Fe 结合和 αKG 结合残基置于预期的催化活性构象中,并与活性位点口中的脯氨酸肽底物结合一致。炭疽 P4H 结构与 Cr P4H-1 结构的比较表明,肽表面沟的相似性。然而,序列和结构比较表明,相邻环的构象差异可能会改变与肽底物的相互作用。这些差异可能是 Cr P4H-1 与炭疽和人 P4H 酶的 K(M)值之间存在显著差异的基础。此外,虽然以前的 P4H 酶结构是单体,但炭疽 P4H 形成α(2)同源二聚体,并提示了对α(2)亚基之间相互作用很重要的残基α(2)β(2)人胶原蛋白 P4H。因此,炭疽 P4H 结构提供了对人 P4H 的α-亚基的结构和功能的深入了解,这可能有助于开发参与纤维化疾病的人 P4H 酶的选择性抑制剂。

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