Center for Biophysical Modeling and Simulation and Department of Chemistry, University of Utah, Salt Lake City, UT 84112, USA.
Schrödinger, L.L.C., 8910 University Center Lane, Suite 270, San Diego, CA 92122, USA.
Structure. 2009 Dec 9;17(12):1660-1668. doi: 10.1016/j.str.2009.10.010.
The function of G-protein-coupled receptors is tightly modulated by the lipid environment. Long-timescale molecular dynamics simulations (totaling approximately 3 mus) of the A(2A) receptor in cholesterol-free bilayers, with and without the antagonist ZM241385 bound, demonstrate the instability of helix II in the apo receptor in cholesterol-poor membrane regions. We directly observe that the effect of cholesterol binding is to stabilize helix II against a buckling-type deformation, perhaps rationalizing the observation that the A(2A) receptor couples to G protein only in the presence of cholesterol (Zezula and Freissmuth, 2008). The results suggest a mechanism by which the A(2A) receptor may function as a coincidence detector, activating only in the presence of both cholesterol and agonist. We also observed a previously hypothesized conformation of the tryptophan "rotameric switch" on helix VI in which a phenylalanine on helix V positions the tryptophan out of the ligand binding pocket.
G 蛋白偶联受体的功能受到脂质环境的紧密调节。对无胆固醇双层中 A(2A)受体(结合和未结合拮抗剂 ZM241385)进行长时程分子动力学模拟(总计约 3 μs),证明了apo 受体在胆固醇贫乏的膜区域中螺旋 II 的不稳定性。我们直接观察到胆固醇结合的作用是稳定螺旋 II 抵抗弯曲变形,这也许可以解释为什么只有在胆固醇存在的情况下 A(2A)受体才能与 G 蛋白偶联(Zezula 和 Freissmuth,2008)。结果表明,A(2A)受体作为巧合探测器发挥作用的机制,仅在存在胆固醇和激动剂的情况下才被激活。我们还观察到一种先前假设的色氨酸“构象开关”的构象,在这种构象中,螺旋 V 上的苯丙氨酸将色氨酸定位在配体结合口袋之外。