• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

中心极限定理在具有强迁移的结构化合并模型中对合并时间的应用。

An application of the central limit theorem to coalescence times in the structured coalescent model with strong migration.

作者信息

Notohara Morihiro

机构信息

Graduate School of Natural Sciences, Nagoya City University, Mizuho, Nagoya, 467-8501, Japan.

出版信息

J Math Biol. 2010 Nov;61(5):695-714. doi: 10.1007/s00285-009-0318-z. Epub 2009 Dec 24.

DOI:10.1007/s00285-009-0318-z
PMID:20033692
Abstract

The structured coalescent describes the ancestral relationship among sampled genes from a geographically structured population. The aim of this article is to apply the central limit theorem to functionals of the migration process to study coalescence times and population structure. An application of the law of large numbers to the migration process leads to the strong migration limit for the distributions of coalescence times. The central limit theorem enables us to obtain approximate distributions of coalescence times for strong migration. We show that approximate distributions depend on the population structure. If migration is conservative and strong, we can define a kind of effective population size N(e)(*), with which the entire population approximately behaves like a panmictic population. On the other hand, the approximate distributions for nonconservative migration are qualitatively different from those for conservative migration. And the entire population behaves unlike a panmictic population even though migration is strong.

摘要

结构化合并描述了来自地理结构化种群的抽样基因之间的祖先关系。本文的目的是将中心极限定理应用于迁移过程的泛函,以研究合并时间和种群结构。大数定律在迁移过程中的应用导致了合并时间分布的强迁移极限。中心极限定理使我们能够获得强迁移情况下合并时间的近似分布。我们表明,近似分布取决于种群结构。如果迁移是保守且强烈的,我们可以定义一种有效种群大小N(e)(*),在这种情况下,整个种群的行为近似于一个随机交配的种群。另一方面,非保守迁移的近似分布与保守迁移的近似分布在性质上有所不同。即使迁移很强,整个种群的行为也不像随机交配的种群。

相似文献

1
An application of the central limit theorem to coalescence times in the structured coalescent model with strong migration.中心极限定理在具有强迁移的结构化合并模型中对合并时间的应用。
J Math Biol. 2010 Nov;61(5):695-714. doi: 10.1007/s00285-009-0318-z. Epub 2009 Dec 24.
2
The coalescence time of sampled genes in the structured coalescent model.结构化合并模型中采样基因的合并时间。
Theor Popul Biol. 2006 Nov;70(3):289-99. doi: 10.1016/j.tpb.2006.05.005. Epub 2006 May 26.
3
Coalescence times for three genes provide sufficient information to distinguish population structure from population size changes.三个基因的合并时间提供了足够的信息来区分种群结构和种群大小变化。
J Math Biol. 2019 Jan;78(1-2):189-224. doi: 10.1007/s00285-018-1272-4. Epub 2018 Jul 20.
4
Coalescent approximation for structured populations in a stationary random environment.平稳随机环境下结构化种群的合并近似法。
Theor Popul Biol. 2010 Nov;78(3):192-9. doi: 10.1016/j.tpb.2010.06.008. Epub 2010 Jul 7.
5
Convergence to the island-model coalescent process in populations with restricted migration.在迁移受限的种群中向岛屿模型合并过程的收敛。
Genetics. 2006 Jan;172(1):701-8. doi: 10.1534/genetics.105.047597. Epub 2005 Oct 11.
6
Asymptotic distributions of coalescence times and ancestral lineage numbers for populations with temporally varying size.时变大小种群的合并时间和祖先谱系数量的渐近分布。
Genetics. 2013 Jul;194(3):721-36. doi: 10.1534/genetics.113.151522. Epub 2013 May 11.
7
The distribution of the coalescence time and the number of pairwise nucleotide differences in the "isolation with migration" model.“迁移隔离”模型中合并时间的分布及成对核苷酸差异的数量
Theor Popul Biol. 2008 Mar;73(2):277-88. doi: 10.1016/j.tpb.2007.11.001. Epub 2007 Nov 23.
8
Population structure and coalescence in pedigrees: Comparisons to the structured coalescent and a framework for inference.家系中的群体结构与溯祖:与结构化溯祖的比较及推断框架
Theor Popul Biol. 2017 Jun;115:1-12. doi: 10.1016/j.tpb.2017.01.004. Epub 2017 Jan 28.
9
On the eigenvalue effective size of structured populations.关于结构化种群的特征值有效大小
J Math Biol. 2015 Sep;71(3):595-646. doi: 10.1007/s00285-014-0832-5. Epub 2014 Sep 18.
10
Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics.穿越崎岖天际线的平稳天空之旅:基于贝叶斯合并的种群动态推断。
Mol Biol Evol. 2008 Jul;25(7):1459-71. doi: 10.1093/molbev/msn090. Epub 2008 Apr 11.

引用本文的文献

1
Critical assessment of coalescent simulators in modeling recombination hotspots in genomic sequences.对基因组序列中重组热点建模的合并模拟器的批判性评估。
BMC Bioinformatics. 2014 Jan 3;15:3. doi: 10.1186/1471-2105-15-3.

本文引用的文献

1
Extensions of the coalescent effective population size.溯祖有效种群大小的扩展。
Genetics. 2009 Jan;181(1):341-5. doi: 10.1534/genetics.108.092460. Epub 2008 Nov 10.
2
The coalescence time of sampled genes in the structured coalescent model.结构化合并模型中采样基因的合并时间。
Theor Popul Biol. 2006 Nov;70(3):289-99. doi: 10.1016/j.tpb.2006.05.005. Epub 2006 May 26.
3
On the meaning and existence of an effective population size.关于有效种群大小的意义与存在
Genetics. 2005 Feb;169(2):1061-70. doi: 10.1534/genetics.104.026799. Epub 2004 Oct 16.
4
Coalescent process with fluctuating population size and its effective size.具有波动种群大小及其有效大小的溯祖过程
Theor Popul Biol. 2004 Feb;65(1):39-48. doi: 10.1016/j.tpb.2003.09.001.
5
Coalescence time for two genes from a subdivided population.来自细分群体的两个基因的合并时间。
J Math Biol. 2001 Nov;43(5):397-410. doi: 10.1007/s002850100104.
6
Geographical invariance and the strong-migration limit in subdivided populations.细分种群中的地理不变性与强迁移极限
J Math Biol. 2000 Aug;41(2):123-42. doi: 10.1007/s002850070002.
7
The number of segregating sites in a sample of DNA sequences from a geographically structured population.来自具有地理结构的种群的DNA序列样本中的分离位点数量。
J Math Biol. 1997 Dec;36(2):188-200. doi: 10.1007/s002850050097.
8
Structured coalescent processes on different time scales.不同时间尺度上的结构化合并过程。
Genetics. 1997 Aug;146(4):1501-14. doi: 10.1093/genetics/146.4.1501.
9
The strong-migration limit in geographically structured populations.地理结构种群中的强迁移极限
J Math Biol. 1980 Apr;9(2):101-14. doi: 10.1007/BF00275916.
10
The coalescent in two partially isolated diffusion populations.两个部分隔离的扩散种群中的溯祖过程。
Genet Res. 1988 Dec;52(3):213-22. doi: 10.1017/s0016672300027683.