Research Group of Shock Waves in Soft and Biological Matter, Fraunhofer Ernst-Mach-Institute for High-Speed Dynamics (EMI), Eckerstrasse 4, 79104 Freiburg, Germany.
Int J Mol Sci. 2009 Dec 1;10(12):5135-5216. doi: 10.3390/ijms10125135.
This review discusses several computational methods used on different length and time scales for the simulation of material behavior. First, the importance of physical modeling and its relation to computer simulation on multiscales is discussed. Then, computational methods used on different scales are shortly reviewed, before we focus on the molecular dynamics (MD) method. Here we survey in a tutorial-like fashion some key issues including several MD optimization techniques. Thereafter, computational examples for the capabilities of numerical simulations in materials research are discussed. We focus on recent results of shock wave simulations of a solid which are based on two different modeling approaches and we discuss their respective assets and drawbacks with a view to their application on multiscales. Then, the prospects of computer simulations on the molecular length scale using coarse-grained MD methods are covered by means of examples pertaining to complex topological polymer structures including star-polymers, biomacromolecules such as polyelectrolytes and polymers with intrinsic stiffness. This review ends by highlighting new emerging interdisciplinary applications of computational methods in the field of medical engineering where the application of concepts of polymer physics and of shock waves to biological systems holds a lot of promise for improving medical applications such as extracorporeal shock wave lithotripsy or tumor treatment.
本文讨论了几种用于模拟材料行为的不同长度和时间尺度的计算方法。首先,讨论了物理建模的重要性及其与多尺度计算机模拟的关系。然后,简要回顾了不同尺度上使用的计算方法,然后重点介绍分子动力学 (MD) 方法。在这里,我们以教程的方式介绍了一些关键问题,包括几种 MD 优化技术。此后,讨论了材料研究中数值模拟能力的计算实例。我们重点介绍了基于两种不同建模方法的固体激波模拟的最新结果,并讨论了它们各自的优缺点,以期将其应用于多尺度。然后,通过涉及复杂拓扑聚合物结构(包括星形聚合物、聚电解质等生物大分子和固有刚度聚合物)的实例,介绍了使用粗粒 MD 方法在分子长度尺度上进行计算机模拟的前景。本文最后强调了计算方法在医学工程领域新出现的跨学科应用,其中聚合物物理和冲击波的概念在生物系统中的应用为改善体外冲击波碎石术或肿瘤治疗等医学应用带来了很大的希望。