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物理菌输运网络逼近中的模式形成与演化特征。

Characteristics of pattern formation and evolution in approximations of Physarum transport networks.

机构信息

Centre for Unconventional Computing, University of the West of England, Bristol, BS16 1QY, UK.

出版信息

Artif Life. 2010 Spring;16(2):127-53. doi: 10.1162/artl.2010.16.2.16202.

Abstract

Most studies of pattern formation place particular emphasis on its role in the development of complex multicellular body plans. In simpler organisms, however, pattern formation is intrinsic to growth and behavior. Inspired by one such organism, the true slime mold Physarum polycephalum, we present examples of complex emergent pattern formation and evolution formed by a population of simple particle-like agents. Using simple local behaviors based on chemotaxis, the mobile agent population spontaneously forms complex and dynamic transport networks. By adjusting simple model parameters, maps of characteristic patterning are obtained. Certain areas of the parameter mapping yield particularly complex long term behaviors, including the circular contraction of network lacunae and bifurcation of network paths to maintain network connectivity. We demonstrate the formation of irregular spots and labyrinthine and reticulated patterns by chemoattraction. Other Turing-like patterning schemes were obtained by using chemorepulsion behaviors, including the self-organization of regular periodic arrays of spots, and striped patterns. We show that complex pattern types can be produced without resorting to the hierarchical coupling of reaction-diffusion mechanisms. We also present network behaviors arising from simple pre-patterning cues, giving simple examples of how the emergent pattern formation processes evolve into networks with functional and quasi-physical properties including tensionlike effects, network minimization behavior, and repair to network damage. The results are interpreted in relation to classical theories of biological pattern formation in natural systems, and we suggest mechanisms by which emergent pattern formation processes may be used as a method for spatially represented unconventional computation.

摘要

大多数关于模式形成的研究特别强调其在复杂多细胞体计划发育中的作用。然而,在更简单的生物体中,模式形成是生长和行为的内在特征。受一种这样的生物体——真正的多形绒泡菌的启发,我们展示了由一群简单的粒子状剂形成的复杂涌现模式形成和进化的例子。使用基于趋化性的简单局部行为,移动剂群体自发形成复杂而动态的运输网络。通过调整简单的模型参数,可以获得特征模式的映射。参数映射的某些区域会产生特别复杂的长期行为,包括网络空隙的圆形收缩和网络路径的分叉以保持网络连接性。我们通过趋化性证明了不规则斑点以及迷宫和网状图案的形成。通过使用化学排斥行为获得了其他类似于 Turing 的模式形成方案,包括规则斑点的周期性阵列的自组织和条纹图案。我们表明,无需诉诸反应扩散机制的层次耦合,就可以产生复杂的图案类型。我们还展示了来自简单预图案线索的网络行为,给出了简单的例子,说明涌现的模式形成过程如何演变成具有功能和准物理特性的网络,包括张力效应、网络最小化行为以及对网络损伤的修复。结果与自然系统中生物模式形成的经典理论有关,我们提出了涌现模式形成过程如何作为空间表示非常规计算的方法的机制。

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