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多单元记录的精确尖峰分类。

Accurate spike sorting for multi-unit recordings.

机构信息

Laboratory for Neural Circuit Theory, RIKEN Brain Science Institute, Wako, Saitama, Japan.

出版信息

Eur J Neurosci. 2010 Jan;31(2):263-72. doi: 10.1111/j.1460-9568.2009.07068.x. Epub 2010 Jan 13.

Abstract

Simultaneous recordings with multi-channel electrodes are widely used for studying how multiple neurons are recruited for information processing. The recorded signals contain the spike events of a number of adjacent or distant neurons and must be sorted correctly into spike trains of individual neurons. Several mathematical methods have been proposed for spike sorting but the process is difficult in practice, as extracellularly recorded signals are corrupted by biological noise. Moreover, spike sorting is often time-consuming, as it usually requires corrections by human operators. Methods are needed to obtain reliable spike clusters without heavy manual operation. Here, we introduce several methods of spike sorting and compare the accuracy and robustness of their performance by using publicized data of simultaneous extracellular and intracellular recordings of neuronal activity. The best and excellent performance was obtained when a newly proposed filter for spike detection was combined with the wavelet transform and variational Bayes for a finite mixture of Student's t-distributions, namely, robust variational Bayes. Wavelet transform extracts features that are characteristic of the detected spike waveforms and the robust variational Bayes categorizes the extracted features into clusters corresponding to spikes of the individual neurons. The use of Student's t-distributions makes this categorization robust against noisy data points. Some other new methods also exhibited reasonably good performance. We implemented all of the proposed methods in a C++ code named 'EToS' (Efficient Technology of Spike sorting), which is freely available on the Internet.

摘要

同时记录多通道电极被广泛用于研究如何为信息处理的多个神经元被招募。记录的信号包含了一些相邻或遥远的神经元的尖峰事件,必须正确地分类到个别神经元的尖峰列车。已经提出了几种用于尖峰排序的数学方法,但在实践中这个过程是困难的,因为细胞外记录的信号被生物噪声污染。此外,尖峰排序通常是耗时的,因为它通常需要由人工操作员进行修正。需要获得可靠的尖峰集群,而无需繁重的手动操作的方法。在这里,我们介绍了几种尖峰排序方法,并通过使用同时进行的神经元活动的细胞外和细胞内记录的公开数据来比较它们的性能的准确性和稳健性。当一个新提出的用于检测尖峰的滤波器与小波变换和有限混合的学生 t 分布的变分贝叶斯相结合时,获得了最佳和优秀的性能,即稳健的变分贝叶斯。小波变换提取出与检测到的尖峰波形特征的特征,而稳健的变分贝叶斯将提取的特征分类为对应于各个神经元的尖峰的簇。使用学生 t 分布使得这种分类对噪声数据点具有鲁棒性。其他一些新方法也表现出了相当好的性能。我们在一个名为'EToS'(高效尖峰排序技术)的 C++代码中实现了所有提出的方法,该代码可在互联网上免费获得。

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