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微秒时间尺度的分子动力学揭示β2 肾上腺素能受体离子键亚稳定态的协同转换。

Concerted interconversion between ionic lock substates of the beta(2) adrenergic receptor revealed by microsecond timescale molecular dynamics.

机构信息

Department of Biochemistry and Biophysics, University of Rochester Medical School, Rochester, New York, USA.

出版信息

Biophys J. 2010 Jan 6;98(1):76-84. doi: 10.1016/j.bpj.2009.09.046.

Abstract

The recently solved crystallographic structures for the A(2A) adenosine receptor and the beta(1) and beta(2) adrenergic receptors have shown important differences between members of the class-A G-protein-coupled receptors and their archetypal model, rhodopsin, such as the apparent breaking of the ionic lock that stabilizes the inactive structure. Here, we characterize a 1.02 mus all-atom simulation of an apo-beta(2) adrenergic receptor that is missing the third intracellular loop to better understand the inactive structure. Although we find that the structure is remarkably rigid, there is a rapid influx of water into the core of the protein, as well as a slight expansion of the molecule relative to the crystal structure. In contrast to the x-ray crystal structures, the ionic lock rapidly reforms, although we see an activation-precursor-like event wherein the ionic lock opens for approximately 200 ns, accompanied by movements in the transmembrane helices associated with activation. When the lock reforms, we see the structure return to its inactive conformation. We also find that the ionic lock exists in three states: closed (or locked), semi-open with a bridging water molecule, and open. The interconversion of these states involves the concerted motion of the entire protein. We characterize these states and the concerted motion underlying their interconversion. These findings may help elucidate the connection between key local events and the associated global structural changes during activation.

摘要

最近解决的 A(2A) 腺苷受体和β(1)和β(2)肾上腺素能受体的晶体结构表明,A 类 G 蛋白偶联受体与其原型模型视紫红质之间存在重要差异,例如稳定非活性结构的离子锁的明显破坏。在这里,我们对缺少第三个细胞内环的 apo-β(2)肾上腺素能受体进行了 1.02 微秒的全原子模拟,以更好地理解非活性结构。尽管我们发现该结构非常僵硬,但仍有大量水迅速涌入蛋白质核心,并且分子相对于晶体结构略有扩张。与 X 射线晶体结构相反,离子锁迅速重新形成,尽管我们观察到类似于激活前体的事件,其中离子锁打开约 200 纳秒,同时与激活相关的跨膜螺旋发生运动。当锁重新形成时,我们看到结构恢复到其非活性构象。我们还发现离子锁存在于三种状态:关闭(或锁定)、带桥接水分子的半开和打开。这些状态的相互转换涉及整个蛋白质的协同运动。我们对这些状态及其相互转换背后的协同运动进行了表征。这些发现可能有助于阐明在激活过程中关键局部事件与相关全局结构变化之间的联系。

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