Interdisciplinary Centre for Mathematical and Computational Modelling, University of Warsaw, Zwirki i Wigury 93, 02-089 Warsaw, Poland.
J Phys Chem A. 2010 Feb 18;114(6):2313-8. doi: 10.1021/jp907754r.
Car-Parrinello molecular dynamics simulations were carried out to help interpret proton-transfer processes observed experimentally in porphycene under thermodynamic equilibrium conditions (NVT ensemble) as well as during selective, nonequilibrium vibrational excitations of the molecular scaffold (NVE ensemble). In the NVT ensemble, the population of the trans form in the gas phase at 300 K is 96.5%, and of the cis-1 form is 3.5%, in agreement with experimental data. Approximately 70% of the proton-transfer events are asynchronous double proton transfers. According to the high resolution simulation data they consist of two single transfer events that rapidly take place one after the other. The average time-period between the two consecutive jumps is 220 fs. The gas phase reaction rate estimate at 300 K is 3.6 ps, which is comparable to experimentally determined rates. The NVE ensemble nonequilibrium ab initio MD simulations, which correspond to selective vibrational excitations of the molecular scaffold generated with high resolution laser spectroscopy techniques, exhibit an enhancing property of the 182 cm(-1) vibrational mode and an inhibiting property of the 114 cm(-1) one. Both of them influence the proton-transfer rate, in qualitative agreement with experimental findings. Our ab initio simulations provide new predictions regarding the influence of double-mode vibrational excitations on proton-transfer processes. They can help in setting up future programmable spectroscopic experiments for the proton-transfer translocations.
进行了 Car-Parrinello 分子动力学模拟,以帮助解释在热力学平衡条件(NVT 系综)下以及在分子支架的选择性、非平衡振动激发(NVE 系综)过程中实验观察到的卟吩中的质子转移过程。在 NVT 系综中,300 K 时气相中反式 1 形式的比例为 96.5%,顺式-1 形式的比例为 3.5%,与实验数据一致。大约 70%的质子转移事件是异步双质子转移。根据高分辨率模拟数据,它们由两个快速连续发生的单转移事件组成。两个连续跳跃之间的平均时间间隔为 220 fs。在 300 K 时的气相反应速率估计为 3.6 ps,与实验确定的速率相当。与使用高分辨率激光光谱技术选择性激发分子支架的 NVE 系综非平衡从头算 MD 模拟表现出 182 cm(-1)振动模式的增强性质和 114 cm(-1)振动模式的抑制性质。两者都影响质子转移速率,与实验结果定性一致。我们的从头算模拟提供了关于双模振动激发对质子转移过程影响的新预测。它们可以帮助为质子转移迁移建立未来的可编程光谱实验。