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一种近似价键模型(AVB2)的新型公式及其在卟啉和卟吩互变异构形式中的应用。

A novel formulation of an approximate valence bond model (AVB2) and its application to the tautomeric forms of porphyrin and porphycene.

作者信息

Hallay-Suszek Marta, Grochowski Paweł, Lesyng Bogdan

机构信息

Interdisciplinary Centre for Mathematical and Computational Modelling, University of Warsaw, Pawińskiego 5a, 02-106, Warsaw, Poland.

Department of Biophysics, Institute of Experimental Physics, Faculty of Physics, University of Warsaw, Pasteura 5, 02-093, Warsaw, Poland.

出版信息

J Mol Model. 2019 May 10;25(6):155. doi: 10.1007/s00894-019-4022-7.

Abstract

This study presents a novel formulation of the approximate valence bond method, which can be applied as a very fast generator of the molecular potential energy function. The AVB2 model was formulated and parameterized for porphyrin and porphycene using results of quantum mechanical computations at the B3LYP/6-31G (d, p) level. The DFT potential energy, its gradients, and the Hessian-matrix elements, as well as effective atomic charges at local energy minima and transition states, were used for the parameterization of the AVB2 Hamiltonian matrix. The AVB2 method, and in particular its anharmonic version, very well reproduce the potential energy maps for all representative geometries of the studied systems, including harmonic frequencies, and possible proton translocations. For validation of the method, we performed molecular dynamics simulations for isolated molecules accounting for internal double proton transfer processes, which are strongly correlated with changes of the electronic charge density. The simulated power spectra were compared with the experimental infrared spectra. More precise simulations of IR spectra at the classical and quantum dynamics levels, as well as extensions of the AVB2 parameterization to electronic excited states, are the subject of further research.

摘要

本研究提出了一种近似价键方法的新公式,它可作为分子势能函数的一种非常快速的生成器。利用B3LYP/6 - 31G(d, p)水平的量子力学计算结果,对卟啉和卟吩的AVB2模型进行了公式化和参数化。DFT势能、其梯度、海森矩阵元,以及局部能量极小值和过渡态处的有效原子电荷,被用于AVB2哈密顿矩阵的参数化。AVB2方法,特别是其非谐版本,能很好地再现所研究体系所有代表性几何结构的势能图,包括谐频和可能的质子迁移。为了验证该方法,我们对考虑内部双质子转移过程的孤立分子进行了分子动力学模拟,这些过程与电子电荷密度的变化密切相关。将模拟的功率谱与实验红外光谱进行了比较。在经典和量子动力学水平上对红外光谱进行更精确的模拟,以及将AVB2参数化扩展到电子激发态,是进一步研究的主题。

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