• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

顺铂与半胱氨酸和蛋氨酸在恒定 pH 下的反应;计算研究。

Reactions of cisplatin with cysteine and methionine at constant pH; a computational study.

机构信息

Department of Chemical Physics and Optics, Faculty of Mathematics and Physics, Charles University, Ke Karlovu 3, 121 16, Prague 2, Czech Republic.

出版信息

Dalton Trans. 2010 Feb 7;39(5):1295-301. doi: 10.1039/b913803j. Epub 2009 Nov 27.

DOI:10.1039/b913803j
PMID:20104356
Abstract

Interactions of hydrated cisplatin complexes cis-Pt(NH(3))(2)Cl(H(2)O) and cis-Pt(NH(3))(2)(OH)(H(2)O) with cysteine and methionine in an aqueous solution at constant pH were explored using computational methods. Thermodynamic parameters of considered reactions were studied in a broad pH range, taking up to 4 protonation states of each molecule into account. Reaction free energies at constant pH were obtained from standard Gibbs free energies using the Legendre transformation. Solvation free energies and pK(a) values were calculated using the PCM model with UAHF cavities, recently adapted by us for transition metal complexes. The root mean square error of pK(a) values on a set of model platinum complexes and amino acids was equal to 0.74. At pH 7, the transformed Gibbs free energies differ by up to 15 kcal mol(-1) from the Gibbs free energies of model reactions with a constant number of protons. As for cysteine, calculations confirmed a strong preference for kappaS monodenate bonding in a broad pH range. The most stable product of the second reaction step, which proceeds from monodentate to chelate complex, is the kappa(2)S,N coordinated chelate. The reaction with methionine is more complex. In the first step all three considered methionine donor atoms (N, S and O) are thermodynamically preferred products depending on the platinum complex and the pH. This is in accordance with the experimental observation of a pH dependent migration between N and S donor atoms in a chemically related system. The most stable chelates of platinum with methionine are kappa(2)S,N and kappa(2)N,O bonded complexes. The comparison of reaction free energies of both amino acids suggests, that the bidentate methionine ligand can be displaced even by the monodentate cysteine ligand under certain conditions.

摘要

在恒定 pH 值条件下,使用计算方法研究了水合顺式Pt(NH(3))(2)Cl(H(2)O)和顺式Pt(NH(3))(2)(OH)(H(2)O)与半胱氨酸和蛋氨酸在水溶液中的相互作用。在较宽的 pH 范围内研究了考虑反应的热力学参数,考虑了每个分子的多达 4 个质子化态。通过使用 Legendre 变换从标准吉布斯自由能获得恒 pH 反应的自由能。使用我们最近为过渡金属配合物改编的 PCM 模型(带有 UAHF 腔)计算溶剂化自由能和 pK(a)值。在一组模型铂配合物和氨基酸上,pK(a)值的均方根误差等于 0.74。在 pH 7 时,与具有恒定质子数的模型反应的吉布斯自由能相差高达 15 kcal mol(-1)。对于半胱氨酸,计算结果在较宽的 pH 范围内证实了对 kappaS 单齿键合的强烈偏好。从单齿配体到螯合配合物进行的第二步反应的最稳定产物是 kappa(2)S,N 配位的螯合物。与蛋氨酸的反应更为复杂。在第一步中,所有三种考虑的蛋氨酸供体原子(N、S 和 O)在很大程度上都是热力学上的优先产物,这取决于铂配合物和 pH 值。这与在化学相关系统中观察到的 N 和 S 供体原子之间 pH 依赖性迁移的实验观察结果一致。与蛋氨酸形成的最稳定的铂螯合物是 kappa(2)S,N 和 kappa(2)N,O 键合的配合物。两种氨基酸的反应自由能比较表明,在某些条件下,双齿蛋氨酸配体甚至可以被单齿半胱氨酸配体取代。

相似文献

1
Reactions of cisplatin with cysteine and methionine at constant pH; a computational study.顺铂与半胱氨酸和蛋氨酸在恒定 pH 下的反应;计算研究。
Dalton Trans. 2010 Feb 7;39(5):1295-301. doi: 10.1039/b913803j. Epub 2009 Nov 27.
2
Cisplatin interaction with cysteine and methionine in aqueous solution: computational DFT/PCM study.顺铂在水溶液中与半胱氨酸和蛋氨酸的相互作用:密度泛函理论/极化连续介质模型的计算研究
J Phys Chem B. 2009 Mar 12;113(10):3139-50. doi: 10.1021/jp807645x.
3
Cisplatin interaction with cysteine and methionine, a theoretical DFT study.顺铂与半胱氨酸和蛋氨酸的相互作用:一项理论密度泛函理论研究
J Inorg Biochem. 2005 Nov;99(11):2184-96. doi: 10.1016/j.jinorgbio.2005.07.021. Epub 2005 Sep 23.
4
Charge-scaled cavities in polarizable continuum model: determination of acid dissociation constants for platinum-amino acid complexes.极化连续介质模型中的电荷标度腔:铂-氨基酸配合物酸解离常数的测定
J Chem Phys. 2009 Oct 7;131(13):135101. doi: 10.1063/1.3236842.
5
Cisplatin-mediated selective hydrolytic cleavage of methionine-containing peptides with neighboring serine or histidine residues.顺铂介导的含甲硫氨酸且相邻残基为丝氨酸或组氨酸的肽的选择性水解切割。
J Inorg Biochem. 2004 Nov;98(11):1947-56. doi: 10.1016/j.jinorgbio.2004.08.016.
6
Cisplatin interaction with amino acids cysteine and methionine from gas phase to solutions with constant pH.顺铂与半胱氨酸和蛋氨酸在气相到恒 pH 值溶液中的相互作用。
Interdiscip Sci. 2010 Mar;2(1):98-114. doi: 10.1007/s12539-010-0094-x. Epub 2010 Jan 28.
7
Theoretical and experimental sulfur K-edge X-ray absorption spectroscopic study of cysteine, cystine, homocysteine, penicillamine, methionine and methionine sulfoxide.半胱氨酸、胱氨酸、高半胱氨酸、青霉胺、蛋氨酸及蛋氨酸亚砜的理论与实验硫 K 边 X 射线吸收光谱研究
Dalton Trans. 2009 May 14(18):3542-58. doi: 10.1039/b819257j. Epub 2009 Mar 10.
8
Cisplatin mediates selective downstream hydrolytic cleavage of Met-(Gly)(n)-His segments (n=1,2) in methionine- and histidine-containing peptides: the role of ammine loss trans to the initial Pt-S(Met) anchor in facilitating amide hydrolysis.顺铂介导含甲硫氨酸和组氨酸的肽段中Met-(Gly)(n)-His片段(n = 1,2)的选择性下游水解裂解:与初始Pt-S(Met)锚定点反位的氨损失在促进酰胺水解中的作用。
J Inorg Biochem. 2006 Sep;100(9):1506-13. doi: 10.1016/j.jinorgbio.2006.03.017. Epub 2006 May 16.
9
The chemistry of dinuclear analogues of the anticancer drug cisplatin. A DFT/CDM study.抗癌药物顺铂双核类似物的化学性质。一项密度泛函理论/电荷密度迁移研究。
J Am Chem Soc. 2006 Feb 8;128(5):1654-63. doi: 10.1021/ja055741k.
10
Activation barriers and rate constants for hydration of platinum and palladium square-planar complexes: an ab initio study.铂和钯平面正方形配合物水合作用的活化能垒和速率常数:一项从头算研究。
J Chem Phys. 2004 Jan 15;120(3):1253-62. doi: 10.1063/1.1633757.

引用本文的文献

1
Determination of Amino Acids' p: Importance of Cavity Scaling within Implicit Solvation Models and Choice of DFT Functionals.氨基酸p值的测定:隐式溶剂化模型中腔尺度的重要性及密度泛函理论泛函的选择
J Phys Chem B. 2024 Feb 22;128(7):1627-1637. doi: 10.1021/acs.jpcb.3c07007. Epub 2024 Feb 12.
2
Identification of Platinum(II) Sulfide Complexes Suitable as Intramuscular Cyanide Countermeasures.鉴定适合作为肌肉内氰化物解毒剂的二价铂硫化物配合物。
Chem Res Toxicol. 2022 Nov 21;35(11):1983-1996. doi: 10.1021/acs.chemrestox.2c00157. Epub 2022 Oct 6.
3
Advances in Our Understanding of the Molecular Mechanisms of Action of Cisplatin in Cancer Therapy.
我们对顺铂在癌症治疗中作用分子机制的认识进展
J Exp Pharmacol. 2021 Mar 18;13:303-328. doi: 10.2147/JEP.S267383. eCollection 2021.
4
Formation of chelate structure between His-Met dipeptide and diaqua-cisplatin complex; DFT/PCM computational study.His-Met 二肽与顺式二水合铂配合物形成螯合结构;DFT/PCM 计算研究。
J Biol Inorg Chem. 2018 May;23(3):363-376. doi: 10.1007/s00775-018-1536-x. Epub 2018 Feb 8.
5
Atomic level rendering of DNA-drug encounter.原子水平呈现 DNA-药物相互作用。
Biophys J. 2014 Jan 21;106(2):421-9. doi: 10.1016/j.bpj.2013.11.4494.
6
Can Satraplatin be hydrated before the reduction process occurs? The DFT computational study.在还原过程发生之前,Satraplatin 可以被水合吗?基于密度泛函理论的计算研究。
J Mol Model. 2013 Nov;19(11):4669-80. doi: 10.1007/s00894-012-1442-z. Epub 2012 May 30.