Pedersen T G, Sigurskjold B W, Andersen K V, Kjaer M, Poulsen F M, Dobson C M, Redfield C
Kemisk Afdeling, Carlsberg Laboratorium, Valby, Copenhagen, Denmark.
J Mol Biol. 1991 Mar 20;218(2):413-26. doi: 10.1016/0022-2836(91)90722-i.
Amide hydrogen/deuterium exchange behaviour has been studied for all of the peptide amides of hen lysozyme by means of two-dimensional n.m.r. spectroscopy. The amides have been grouped into four categories on the basis of their rates of exchange in solution at pH 4.2 and 7.5. The distribution of the amides into the different categories has been examined in the light of the crystallographic structural information, considering the type of secondary structure, the nature of hydrogen bonding and the distance from the protein surface. None of these features was found to determine uniquely the pattern of hydrogen exchange rates within the protein. The exchange behaviour of the individual amides could, however, in general be rationalized by a combination of these features. Hydrogen exchange was also monitored in both tetragonal and triclinic crystals of lysozyme, by allowing exchange to take place in the crystals prior to dissolution and recording of n.m.r. spectra under conditions where further exchange was minimized. This enabled direct comparison to be made of the exchange behaviour in the crystals and solution. A reduction in exchange rate was observed in the crystalline state relative to solution for a substantial number of amides and distinct differences between exchange in the different crystals could be observed. These differences between the solution and the different crystal states do not, however, correlate in a simple manner with proximity to intermolecular contacts in the crystals. However, the existence of these contacts, which are on the surface of the protein molecule, have a profound effect on the exchange of amides in the interior of the protein. The results indicate that the spectrum of fluctuations giving rise to hydrogen exchange may be significantly altered by the intermolecular interactions present within the crystalline state.
已通过二维核磁共振光谱法研究了溶菌酶所有肽酰胺的酰胺氢/氘交换行为。根据酰胺在pH 4.2和7.5溶液中的交换速率,将其分为四类。结合晶体学结构信息,考虑二级结构类型、氢键性质和距蛋白质表面的距离,研究了酰胺在不同类别中的分布情况。发现这些特征均不能唯一地确定蛋白质内氢交换速率的模式。然而,单个酰胺的交换行为通常可以通过这些特征的组合来合理地解释。还通过在溶菌酶的四方晶体和三斜晶体中监测氢交换,方法是在溶解晶体并在进一步交换最小化的条件下记录核磁共振光谱之前,先让晶体中的交换发生。这使得能够直接比较晶体和溶液中的交换行为。相对于溶液,在晶体状态下观察到大量酰胺的交换速率降低,并且可以观察到不同晶体之间交换的明显差异。然而,溶液和不同晶体状态之间的这些差异与晶体中分子间接触的接近程度并没有简单的相关性。然而,这些位于蛋白质分子表面的接触的存在,对蛋白质内部酰胺的交换有深远影响。结果表明,晶体状态下存在的分子间相互作用可能会显著改变引起氢交换的波动谱。