• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

直接启动因 RNA 聚合酶正面碰撞而停滞的复制叉。

Direct restart of a replication fork stalled by a head-on RNA polymerase.

机构信息

The Rockefeller University, Howard Hughes Medical Institute, 1230 York Avenue, New York, NY 10021, USA.

出版信息

Science. 2010 Jan 29;327(5965):590-2. doi: 10.1126/science.1179595.

DOI:10.1126/science.1179595
PMID:20110508
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2861996/
Abstract

In vivo studies suggest that replication forks are arrested by encounters with head-on transcription complexes. Yet, the fate of the replisome and RNA polymerase (RNAP) after a head-on collision is unknown. We found that the Escherichia coli replisome stalls upon collision with a head-on transcription complex, but instead of collapsing, the replication fork remains highly stable and eventually resumes elongation after displacing the RNAP from DNA. We also found that the transcription-repair coupling factor Mfd promotes direct restart of the fork after the collision by facilitating displacement of the RNAP. These findings demonstrate the intrinsic stability of the replication apparatus and a previously unknown role for the transcription-coupled repair pathway in promoting replication past a RNAP block.

摘要

体内研究表明,复制叉会因与迎面而来的转录复合物相遇而停滞。然而,迎面碰撞后复制体和 RNA 聚合酶 (RNAP) 的命运尚不清楚。我们发现,大肠杆菌复制体在与迎面而来的转录复合物碰撞时会停滞,但复制叉不会崩溃,而是保持高度稳定,并在将 RNAP 从 DNA 上置换后最终恢复延伸。我们还发现,转录修复偶联因子 Mfd 通过促进 RNAP 的置换,促进碰撞后叉的直接重新启动。这些发现表明复制装置具有内在的稳定性,以及转录偶联修复途径在促进 RNA 聚合酶阻断后的复制方面的未知作用。

相似文献

1
Direct restart of a replication fork stalled by a head-on RNA polymerase.直接启动因 RNA 聚合酶正面碰撞而停滞的复制叉。
Science. 2010 Jan 29;327(5965):590-2. doi: 10.1126/science.1179595.
2
Direct restart of a replication fork stalled by a head-on RNA polymerase.由迎面而来的RNA聚合酶导致停滞的复制叉的直接重启。
J Vis Exp. 2010 Apr 29(38):1919. doi: 10.3791/1919.
3
RNA polymerase mutants defective in the initiation of transcription-coupled DNA repair.在转录偶联DNA修复起始过程中存在缺陷的RNA聚合酶突变体。
Nucleic Acids Res. 2005 Feb 1;33(2):755-64. doi: 10.1093/nar/gki225. Print 2005.
4
Reconstruction of bacterial transcription-coupled repair at single-molecule resolution.在单分子分辨率下重建细菌转录偶联修复。
Nature. 2016 Aug 11;536(7615):234-7. doi: 10.1038/nature19080. Epub 2016 Aug 3.
5
Head-on collision between a DNA replication apparatus and RNA polymerase transcription complex.DNA复制装置与RNA聚合酶转录复合体之间的正面碰撞。
Science. 1995 Feb 24;267(5201):1131-7. doi: 10.1126/science.7855590.
6
Bypass of complex co-directional replication-transcription collisions by replisome skipping.复制体跳跃绕过复杂共方向复制-转录碰撞。
Nucleic Acids Res. 2021 Sep 27;49(17):9870-9885. doi: 10.1093/nar/gkab760.
7
The transcription-repair coupling factor Mfd associates with RNA polymerase in the absence of exogenous damage.转录修复偶联因子 Mfd 与 RNA 聚合酶在不存在外源损伤的情况下结合。
Nat Commun. 2018 Apr 20;9(1):1570. doi: 10.1038/s41467-018-03790-z.
8
What happens when replication and transcription complexes collide?当复制和转录复合物发生碰撞时会发生什么?
Cell Cycle. 2010 Jul 1;9(13):2537-43. doi: 10.4161/cc.9.13.12122.
9
The enigmatic role of Mfd in replication-transcription conflicts in bacteria.细菌中 Mfd 在复制-转录冲突中的神秘作用。
DNA Repair (Amst). 2019 Sep;81:102659. doi: 10.1016/j.dnarep.2019.102659. Epub 2019 Jul 8.
10
The replisome uses mRNA as a primer after colliding with RNA polymerase.复制体在与RNA聚合酶碰撞后以mRNA作为引物。
Nature. 2008 Dec 11;456(7223):762-6. doi: 10.1038/nature07527. Epub 2008 Nov 19.

引用本文的文献

1
Participants in Transcription-Replication Conflict and Their Role in Formation and Resolution of R-Loops.转录-复制冲突中的参与者及其在R环形成和解决中的作用。
Int J Mol Sci. 2025 Jul 19;26(14):6951. doi: 10.3390/ijms26146951.
2
An anti-virulence drug targeting the evolvability protein Mfd protects against infections with antimicrobial resistant ESKAPE pathogens.一种靶向进化性蛋白Mfd的抗毒力药物可抵御对抗菌素耐药的ESKAPE病原体感染。
Nat Commun. 2025 Apr 28;16(1):3324. doi: 10.1038/s41467-025-58282-8.
3
Concise Overview of Methodologies Employed in the Study of Bacterial DNA Replication.

本文引用的文献

1
Transcription-coupled DNA repair: two decades of progress and surprises.转录偶联DNA修复:二十年的进展与惊喜
Nat Rev Mol Cell Biol. 2008 Dec;9(12):958-70. doi: 10.1038/nrm2549.
2
The replisome uses mRNA as a primer after colliding with RNA polymerase.复制体在与RNA聚合酶碰撞后以mRNA作为引物。
Nature. 2008 Dec 11;456(7223):762-6. doi: 10.1038/nature07527. Epub 2008 Nov 19.
3
Replication forks blocked by protein-DNA complexes have limited stability in vitro.被蛋白质-DNA复合物阻断的复制叉在体外稳定性有限。
细菌DNA复制研究中所采用方法的简要概述。
Int J Mol Sci. 2025 Jan 7;26(2):446. doi: 10.3390/ijms26020446.
4
RNA Polymerase II is a Polar Roadblock to a Progressing DNA Fork.RNA聚合酶II是前进中的DNA复制叉的极性障碍。
bioRxiv. 2024 Oct 13:2024.10.11.617674. doi: 10.1101/2024.10.11.617674.
5
Genome-wide Mapping of Topoisomerase Binding Sites Suggests Topoisomerase 3α (TOP3A) as a Reader of Transcription-Replication Conflicts (TRC).全基因组拓扑异构酶结合位点图谱表明拓扑异构酶3α(TOP3A)是转录-复制冲突(TRC)的读取器。
bioRxiv. 2024 Jun 21:2024.06.17.599352. doi: 10.1101/2024.06.17.599352.
6
An emerging paradigm in epigenetic marking: coordination of transcription and replication.表观遗传标记中的新兴范式:转录和复制的协调。
Transcription. 2024 Feb-Apr;15(1-2):22-37. doi: 10.1080/21541264.2024.2316965. Epub 2024 Feb 20.
7
Direct visualization of replication and R-loop collision using single-molecule imaging.使用单分子成像技术直接观察复制和 R 环碰撞。
Nucleic Acids Res. 2024 Jan 11;52(1):259-273. doi: 10.1093/nar/gkad1101.
8
Embracing Heterogeneity: Challenging the Paradigm of Replisomes as Deterministic Machines.拥抱异质性:挑战复制体作为确定性机器的范式。
Chem Rev. 2023 Dec 13;123(23):13419-13440. doi: 10.1021/acs.chemrev.3c00436. Epub 2023 Nov 16.
9
Mutation bias and adaptation in bacteria.细菌中的突变偏向和适应性。
Microbiology (Reading). 2023 Nov;169(11). doi: 10.1099/mic.0.001404.
10
Looping out of control: R-loops in transcription-replication conflict.失控的循环:转录-复制冲突中的 R 环。
Chromosoma. 2024 Jan;133(1):37-56. doi: 10.1007/s00412-023-00804-8. Epub 2023 Jul 7.
J Mol Biol. 2008 Aug 29;381(2):249-55. doi: 10.1016/j.jmb.2008.05.053. Epub 2008 May 29.
4
Replication fork barriers: pausing for a break or stalling for time?复制叉障碍:暂停休息还是因时而停滞?
EMBO Rep. 2007 Apr;8(4):346-53. doi: 10.1038/sj.embor.7400940.
5
Avoiding and resolving conflicts between DNA replication and transcription.避免和解决DNA复制与转录之间的冲突。
DNA Repair (Amst). 2007 Jul 1;6(7):981-93. doi: 10.1016/j.dnarep.2007.02.017. Epub 2007 Mar 30.
6
Replisome mechanics: insights into a twin DNA polymerase machine.复制体机制:对双DNA聚合酶机器的见解
Trends Microbiol. 2007 Apr;15(4):156-64. doi: 10.1016/j.tim.2007.02.007. Epub 2007 Mar 9.
7
Structural basis for bacterial transcription-coupled DNA repair.细菌转录偶联DNA修复的结构基础。
Cell. 2006 Feb 10;124(3):507-20. doi: 10.1016/j.cell.2005.11.045.
8
Replication fork reactivation downstream of a blocked nascent leading strand.受阻新生前导链下游的复制叉重新激活。
Nature. 2006 Feb 2;439(7076):557-62. doi: 10.1038/nature04329.
9
RNA polymerase modulators and DNA repair activities resolve conflicts between DNA replication and transcription.RNA聚合酶调节剂和DNA修复活性可解决DNA复制与转录之间的冲突。
Mol Cell. 2005 Jul 22;19(2):247-58. doi: 10.1016/j.molcel.2005.06.004.
10
Twin DNA pumps of a hexameric helicase provide power to simultaneously melt two duplexes.六聚体解旋酶的双DNA泵提供动力以同时解开两条双链。
Mol Cell. 2004 Aug 13;15(3):453-65. doi: 10.1016/j.molcel.2004.06.039.