Department of Biology, University of Washington, Seattle, Washington, United States of America.
PLoS One. 2010 Jan 27;5(1):e8694. doi: 10.1371/journal.pone.0008694.
Change is a fundamental ingredient of interaction patterns in biology, technology, the economy, and science itself: Interactions within and between organisms change; transportation patterns by air, land, and sea all change; the global financial flow changes; and the frontiers of scientific research change. Networks and clustering methods have become important tools to comprehend instances of these large-scale structures, but without methods to distinguish between real trends and noisy data, these approaches are not useful for studying how networks change. Only if we can assign significance to the partitioning of single networks can we distinguish meaningful structural changes from random fluctuations. Here we show that bootstrap resampling accompanied by significance clustering provides a solution to this problem. To connect changing structures with the changing function of networks, we highlight and summarize the significant structural changes with alluvial diagrams and realize de Solla Price's vision of mapping change in science: studying the citation pattern between about 7000 scientific journals over the past decade, we find that neuroscience has transformed from an interdisciplinary specialty to a mature and stand-alone discipline.
变化是生物学、技术、经济和科学本身互动模式的基本要素:生物体内和生物之间的相互作用发生变化;空中、陆地和海上的交通模式都在变化;全球金融流动发生变化;科学研究的前沿也在变化。网络和聚类方法已成为理解这些大规模结构实例的重要工具,但如果没有方法来区分真实趋势和嘈杂数据,这些方法对于研究网络如何变化就没有用处。只有我们能够为单个网络的划分赋予意义,我们才能将有意义的结构变化与随机波动区分开来。在这里,我们表明,引导重采样伴随着显著聚类为这个问题提供了一个解决方案。为了将变化的结构与网络的变化功能联系起来,我们用冲积图突出和总结显著的结构变化,并实现德索拉·普赖斯(de Solla Price)的科学映射变化的愿景:研究过去十年中约 7000 种科学期刊之间的引文模式,我们发现神经科学已经从一个跨学科的专业领域转变为一个成熟的独立学科。