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酮甾体异构酶活性部位中氧阴离子穴的质子亲和力。

Proton affinity of the oxyanion hole in the active site of ketosteroid isomerase.

机构信息

Department of Chemistry, Stanford University, Stanford, California 94305-5080, USA.

出版信息

Biochemistry. 2010 Mar 30;49(12):2725-31. doi: 10.1021/bi100074s.

Abstract

The absorption spectra of a series of inhibitors bound at the active site of Delta(5)-3-ketosteroid isomerase from Pseudomonas putida were found to exhibit substantial variations in the contributions of the protonated and deprotonated forms. Systematic variation of the inhibitor solution pK(a) combined with a method of quantifying the contributions of each protonation state showed the oxyanion hole in the active site of wild-type Delta(5)-3-ketosteroid isomerase to have a proton affinity equal to a solution pK(a) of 10.05 +/- 0.03, which is similar to the measured pK(a) (10.0) of the reaction intermediate. This observation supports the prediction of Cleland, Kreevoy, Frey, Gassman, and Gerlt that an enzyme utilizing a strong hydrogen bond for catalysis matches the proton affinity of the protein to the intermediate [Cleland, W. W., and Kreevoy, M. M. (1994) Science 264, 1887-1890; Frey, P. A., Whitt, S., and Tobin, J. (1994) Science 264, 1927-1930; Gerlt, J. A., and Gassman, P. G. (1993) Biochemistry 32, 11934-11952]. As the difference in proton affinity decreases, the strength of the hydrogen bond increases, and the closely matched proton affinity between the active site and the reaction intermediate supports the possibility that a short, strong hydrogen bond is catalytically relevant in Delta(5)-3-ketosteroid isomerase.

摘要

一系列抑制剂在假单胞菌属(Pseudomonas putida)的Δ(5)-3-酮甾体异构酶的活性部位结合时的吸收光谱表明,质子化和去质子化形式的贡献有很大变化。系统地改变抑制剂溶液的 pK(a),结合一种量化每种质子化状态贡献的方法,表明野生型Δ(5)-3-酮甾体异构酶活性部位的氧阴离子穴的质子亲和力等于溶液的 pK(a)为 10.05 +/- 0.03,与反应中间体的实测 pK(a)(10.0)相似。这一观察结果支持了 Cleland、Kreevoy、Frey、Gassman 和 Gerlt 的预测,即利用强氢键进行催化的酶将蛋白质的质子亲和力与中间物相匹配[Cleland, W. W., and Kreevoy, M. M. (1994) Science 264, 1887-1890; Frey, P. A., Whitt, S., and Tobin, J. (1994) Science 264, 1927-1930; Gerlt, J. A., and Gassman, P. G. (1993) Biochemistry 32, 11934-11952]。随着质子亲和力的差异减小,氢键的强度增加,活性部位和反应中间物之间匹配的质子亲和力支持了在Δ(5)-3-酮甾体异构酶中短而强的氢键具有催化相关性的可能性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/66eb/2852583/769d4019fb98/nihms180345f1.jpg

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