DNase-seq: a high-resolution technique for mapping active gene regulatory elements across the genome from mammalian cells.
作者信息
Song Lingyun, Crawford Gregory E
机构信息
Institute for Genome Sciences & Policy and Department of Pediatrics, Duke University, Durham, NC 27708, USA.
出版信息
Cold Spring Harb Protoc. 2010 Feb;2010(2):pdb.prot5384. doi: 10.1101/pdb.prot5384.
Abstract
摘要
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本文引用的文献
1
Mapping regulatory elements by DNaseI hypersensitivity chip (DNase-Chip).通过DNA酶I超敏芯片（DNase芯片）绘制调控元件图谱。
Methods Mol Biol. 2009;556:177-90. doi: 10.1007/978-1-60327-192-9_13.
2
Global mapping of protein-DNA interactions in vivo by digital genomic footprinting.通过数字基因组足迹法对体内蛋白质-DNA相互作用进行全球图谱绘制。
Nat Methods. 2009 Apr;6(4):283-9. doi: 10.1038/nmeth.1313. Epub 2009 Mar 22.
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High-resolution mapping and characterization of open chromatin across the genome.全基因组开放染色质的高分辨率图谱绘制与特征分析。
Cell. 2008 Jan 25;132(2):311-22. doi: 10.1016/j.cell.2007.12.014.
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Identification and characterization of cell type-specific and ubiquitous chromatin regulatory structures in the human genome.人类基因组中细胞类型特异性和普遍存在的染色质调控结构的鉴定与表征。
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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.ENCODE试点项目对人类基因组1%的功能元件进行鉴定与分析。
Nature. 2007 Jun 14;447(7146):799-816. doi: 10.1038/nature05874.
6
Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays.利用平铺式DNA微阵列在体内进行DNase I敏感性的全基因组规模图谱绘制。
Nat Methods. 2006 Jul;3(7):511-8. doi: 10.1038/nmeth890.
7
DNase-chip: a high-resolution method to identify DNase I hypersensitive sites using tiled microarrays.DNA酶芯片：一种使用平铺式微阵列鉴定DNA酶I超敏位点的高分辨率方法。
Nat Methods. 2006 Jul;3(7):503-9. doi: 10.1038/nmeth888.
8
Chromatin fine structure of active and repressed genes.活性基因与抑制基因的染色质精细结构
Nature. 1981 Jan 15;289(5794):198-203. doi: 10.1038/289198a0.
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The 5' ends of Drosophila heat shock genes in chromatin are hypersensitive to DNase I.染色质中果蝇热休克基因的5'端对脱氧核糖核酸酶I高度敏感。
Nature. 1980 Aug 28;286(5776):854-60. doi: 10.1038/286854a0.
10
DNase I hypersensitive sites in Drosophila chromatin occur at the 5' ends of regions of transcription.果蝇染色质中的脱氧核糖核酸酶I超敏感位点出现在转录区域的5'端。
Proc Natl Acad Sci U S A. 1981 Jan;78(1):143-6. doi: 10.1073/pnas.78.1.143.
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