Phybase：用于物种树分析的 R 包。
Phybase: an R package for species tree analysis.
机构信息
Department of Agriculture and Natural resources, Delaware State University, Dover, DE 19901, USA.
出版信息
Bioinformatics. 2010 Apr 1;26(7):962-3. doi: 10.1093/bioinformatics/btq062. Epub 2010 Feb 15.
MOTIVATION
Phybase is an R package for phylogenetic analysis using species trees. It provides functions to read, write, manipulate, simulate, estimate, summarize and plot species trees, which contain not only the topology and branch lengths but also population sizes.
AVAILABILITY
The Phybase package is available at the R repository. The manual and supporting materials including source code, sample R code and sample data files for the species tree analysis are available at http://stat.osu.edu/~liuliang/research/phybase.html.
动机
Phybase 是一个用于基于物种树进行系统发育分析的 R 包。它提供了读取、写入、操作、模拟、估计、总结和绘制物种树的功能，这些物种树不仅包含拓扑结构和分支长度，还包含种群大小。
可用性
Phybase 包可在 R 存储库中获得。该手册和支持材料，包括物种树分析的源代码、示例 R 代码和示例数据文件，可在 http://stat.osu.edu/~liuliang/research/phybase.html 上获得。
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