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通过 MgF-3 而不是膦烷揭示酶磷酸转移中近过渡态构象的原子细节。

Atomic details of near-transition state conformers for enzyme phosphoryl transfer revealed by MgF-3 rather than by phosphoranes.

机构信息

Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield S10 2TN, United Kingdom.

出版信息

Proc Natl Acad Sci U S A. 2010 Mar 9;107(10):4555-60. doi: 10.1073/pnas.0910333106. Epub 2010 Feb 17.

Abstract

Prior evidence supporting the direct observation of phosphorane intermediates in enzymatic phosphoryl transfer reactions was based on the interpretation of electron density corresponding to trigonal species bridging the donor and acceptor atoms. Close examination of the crystalline state of beta-phosphoglucomutase, the archetypal phosphorane intermediate-containing enzyme, reveals that the trigonal species is not PO-3 , but is MgF-3 (trifluoromagnesate). Although MgF-3 complexes are transition state analogues rather than phosphoryl group transfer reaction intermediates, the presence of fluorine nuclei in near-transition state conformations offers new opportunities to explore the nature of the interactions, in particular the independent measures of local electrostatic and hydrogen-bonding distributions using 19F NMR. Measurements on three beta-PGM-MgF-3 -sugar phosphate complexes show a remarkable relationship between NMR chemical shifts, primary isotope shifts, NOEs, cross hydrogen bond F...H-N scalar couplings, and the atomic positions determined from the high-resolution crystal structure of the beta-PGM-MgF--3 -G6P complex. The measurements provide independent validation of the structural and isoelectronic MgF--3 model of near-transition state conformations.

摘要

先前有证据支持在酶促磷酸转移反应中直接观察膦中间体,其依据是对桥接供体和受体原子的三角物种的电子密度的解释。仔细观察典型的含膦中间体的β-磷酸葡萄糖变位酶的晶体状态,揭示出三角物种不是 PO-3 ,而是 MgF-3(三氟镁酸盐)。尽管 MgF-3 配合物是过渡态类似物而不是磷酸基团转移反应中间体,但在近过渡态构象中存在氟核为探索相互作用的性质提供了新的机会,特别是使用 19F NMR 独立测量局部静电和氢键分布。对三个β-PGM-MgF-3-糖磷酸酯复合物的测量显示出 NMR 化学位移、主同位素位移、NOE、交叉氢键 F...H-N 标量偶合以及从β-PGM-MgF--3-G6P 复合物的高分辨率晶体结构确定的原子位置之间的显著关系。这些测量提供了对近过渡态构象的结构和等电子 MgF-3 模型的独立验证。

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