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Isoprenoid biosynthesis via the MEP pathway: in vivo Mössbauer spectroscopy identifies a [4Fe-4S]2+ center with unusual coordination sphere in the LytB protein.异戊烯基生物合成途径:体内穆斯堡尔谱学鉴定 LytB 蛋白中具有异常配位环境的 [4Fe-4S]2+中心。
J Am Chem Soc. 2009 Sep 23;131(37):13184-5. doi: 10.1021/ja9012408.
2
Revisiting the IspH catalytic system in the deoxyxylulose phosphate pathway: achieving high activity.重新审视磷酸脱氧木酮糖途径中的IspH催化系统:实现高活性
J Am Chem Soc. 2009 Jul 29;131(29):9931-3. doi: 10.1021/ja903778d.
3
Structure of active IspH enzyme from Escherichia coli provides mechanistic insights into substrate reduction.来自大肠杆菌的活性IspH酶的结构为底物还原提供了机制上的见解。
Angew Chem Int Ed Engl. 2009;48(31):5756-9. doi: 10.1002/anie.200900548.
4
Amiodarone and itraconazole: a rational therapeutic approach for the treatment of chronic Chagas' disease.胺碘酮与伊曲康唑:治疗慢性恰加斯病的合理治疗方法。
Chemotherapy. 2009;55(4):228-33. doi: 10.1159/000219436. Epub 2009 May 19.
5
Lipophilic bisphosphonates as dual farnesyl/geranylgeranyl diphosphate synthase inhibitors: an X-ray and NMR investigation.亲脂性双膦酸盐作为双法尼基焦磷酸合酶/香叶基香叶基焦磷酸合酶双重抑制剂:X射线和核磁共振研究
J Am Chem Soc. 2009 Apr 15;131(14):5153-62. doi: 10.1021/ja808285e.
6
Structure of (E)-4-hydroxy-3-methyl-but-2-enyl diphosphate reductase, the terminal enzyme of the non-mevalonate pathway.(E)-4-羟基-3-甲基-丁-2-烯基二磷酸还原酶的结构,非甲羟戊酸途径的末端酶。
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7
From molecular fossils of bacterial hopanoids to the formation of isoprene units: discovery and elucidation of the methylerythritol phosphate pathway.从细菌藿烷类分子化石到异戊二烯单元的形成:甲基赤藓糖醇磷酸途径的发现与阐明
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8
IspH protein of the deoxyxylulose phosphate pathway: mechanistic studies with C1-deuterium-labeled substrate and fluorinated analogue.磷酸脱氧木酮糖途径的IspH蛋白:用C1-氘标记底物和氟化类似物进行的机理研究
Angew Chem Int Ed Engl. 2008;47(50):9722-5. doi: 10.1002/anie.200803452.
9
Concurrent Chagas' disease and borderline disseminated cutaneous leishmaniasis: The role of amiodarone as an antitrypanosomatidae drug.并发恰加斯病和边界性播散性皮肤利什曼病:胺碘酮作为抗锥虫药物的作用。
Ther Clin Risk Manag. 2008 Jun;4(3):659-63. doi: 10.2147/tcrm.s2801.
10
Ligand-bound S = 1/2 FeMo-cofactor of nitrogenase: hyperfine interaction analysis and implication for the central ligand X identity.固氮酶的配体结合态S = 1/2铁钼辅因子:超精细相互作用分析及其对中心配体X身份的启示。
Inorg Chem. 2008 Jul 21;47(14):6162-72. doi: 10.1021/ic7022743. Epub 2008 Jun 26.

IspH 的生物有机金属作用机制及抑制作用。

Bioorganometallic mechanism of action, and inhibition, of IspH.

机构信息

Center for Biophysics and Computational Biology, University of Illinois, Urbana, IL 61801, USA.

出版信息

Proc Natl Acad Sci U S A. 2010 Mar 9;107(10):4522-7. doi: 10.1073/pnas.0911087107. Epub 2010 Feb 19.

DOI:10.1073/pnas.0911087107
PMID:20173096
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2842026/
Abstract

We have investigated the mechanism of action of Aquifex aeolicus IspH [E-4-hydroxy-3-methyl-but-2-enyl diphosphate (HMBPP) reductase], together with its inhibition, using a combination of site-directed mutagenesis (K ( M ),V (max)), EPR and (1)H, (2)H, (13)C, (31)P, and (57)Fe-electron-nuclear double resonance (ENDOR) spectroscopy. On addition of HMBPP to an (unreactive) E126A IspH mutant, a reaction intermediate forms that has a very similar EPR spectrum to those seen previously with the HMBPP "parent" molecules, ethylene and allyl alcohol, bound to a nitrogenase FeMo cofactor. The EPR spectrum is broadened on (57)Fe labeling and there is no evidence for the formation of allyl radicals. When combined with ENDOR spectroscopy, the results indicate formation of an organometallic species with HMBPP, a pi/sigma "metallacycle" or eta (2)-alkenyl complex. The complex is poised to interact with H(+) from E126 (and H124) in reduced wt IspH, resulting in loss of water and formation of an eta (1)-allyl complex. After reduction, this forms an eta (3)-allyl pi-complex (i.e. containing an allyl anion) that on protonation (at C2 or C4) results in product formation. We find that alkyne diphosphates (such as propargyl diphosphate) are potent IspH inhibitors and likewise form metallacycle complexes, as evidenced by (1)H, (2)H, and (13)C ENDOR, where hyperfine couplings of approximately 6 MHz for (13)C and 10 MHz for (1)H, are observed. Overall, the results are of broad general interest because they provide new insights into IspH catalysis and inhibition, involving organometallic species, and may be applicable to other Fe(4)S(4)-containing proteins, such as IspG.

摘要

我们采用定点突变(K(M),V(max))、EPR 和(1)H、(2)H、(13)C、(31)P 和(57)Fe-电子-核双共振(ENDOR)光谱学的组合,研究了 Aquifex aeolicus IspH [E-4-羟基-3-甲基-2-丁烯基二磷酸(HMBPP)还原酶] 的作用机制及其抑制作用。在向(无反应性)E126A IspH 突变体中添加 HMBPP 后,形成了一种反应中间体,其 EPR 谱与先前与氮酶 FeMo 辅因子结合的 HMBPP“母体”分子乙烯和烯丙醇的 EPR 谱非常相似。在(57)Fe 标记时,EPR 谱变宽,并且没有形成烯丙基自由基的证据。当与 ENDOR 光谱学结合使用时,结果表明形成了与 HMBPP 形成的有机金属物种,即 pi/sigma“金属环”或 eta(2)-烯基配合物。该配合物准备与还原 wt IspH 中的 E126(和 H124)的 H+相互作用,导致水的损失并形成 eta(1)-烯丙基配合物。还原后,它形成了 eta(3)-烯丙基 pi-配合物(即含有烯丙基阴离子),质子化(在 C2 或 C4 处)导致产物形成。我们发现炔二磷酸酯(如丙炔二磷酸酯)是有效的 IspH 抑制剂,并且同样形成金属环配合物,这一点可以通过(1)H、(2)H 和(13)C ENDOR 得到证明,其中观察到大约 6 MHz 的(13)C 和 10 MHz 的(1)H 的超精细耦合。总的来说,这些结果具有广泛的普遍意义,因为它们提供了关于 IspH 催化和抑制作用的新见解,涉及有机金属物种,并且可能适用于其他含有 Fe(4)S(4)的蛋白质,如 IspG。