Center for Biophysics and Computational Biology, University of Illinois, Urbana, IL 61801, USA.
Proc Natl Acad Sci U S A. 2010 Mar 9;107(10):4522-7. doi: 10.1073/pnas.0911087107. Epub 2010 Feb 19.
We have investigated the mechanism of action of Aquifex aeolicus IspH [E-4-hydroxy-3-methyl-but-2-enyl diphosphate (HMBPP) reductase], together with its inhibition, using a combination of site-directed mutagenesis (K ( M ),V (max)), EPR and (1)H, (2)H, (13)C, (31)P, and (57)Fe-electron-nuclear double resonance (ENDOR) spectroscopy. On addition of HMBPP to an (unreactive) E126A IspH mutant, a reaction intermediate forms that has a very similar EPR spectrum to those seen previously with the HMBPP "parent" molecules, ethylene and allyl alcohol, bound to a nitrogenase FeMo cofactor. The EPR spectrum is broadened on (57)Fe labeling and there is no evidence for the formation of allyl radicals. When combined with ENDOR spectroscopy, the results indicate formation of an organometallic species with HMBPP, a pi/sigma "metallacycle" or eta (2)-alkenyl complex. The complex is poised to interact with H(+) from E126 (and H124) in reduced wt IspH, resulting in loss of water and formation of an eta (1)-allyl complex. After reduction, this forms an eta (3)-allyl pi-complex (i.e. containing an allyl anion) that on protonation (at C2 or C4) results in product formation. We find that alkyne diphosphates (such as propargyl diphosphate) are potent IspH inhibitors and likewise form metallacycle complexes, as evidenced by (1)H, (2)H, and (13)C ENDOR, where hyperfine couplings of approximately 6 MHz for (13)C and 10 MHz for (1)H, are observed. Overall, the results are of broad general interest because they provide new insights into IspH catalysis and inhibition, involving organometallic species, and may be applicable to other Fe(4)S(4)-containing proteins, such as IspG.
我们采用定点突变(K(M),V(max))、EPR 和(1)H、(2)H、(13)C、(31)P 和(57)Fe-电子-核双共振(ENDOR)光谱学的组合,研究了 Aquifex aeolicus IspH [E-4-羟基-3-甲基-2-丁烯基二磷酸(HMBPP)还原酶] 的作用机制及其抑制作用。在向(无反应性)E126A IspH 突变体中添加 HMBPP 后,形成了一种反应中间体,其 EPR 谱与先前与氮酶 FeMo 辅因子结合的 HMBPP“母体”分子乙烯和烯丙醇的 EPR 谱非常相似。在(57)Fe 标记时,EPR 谱变宽,并且没有形成烯丙基自由基的证据。当与 ENDOR 光谱学结合使用时,结果表明形成了与 HMBPP 形成的有机金属物种,即 pi/sigma“金属环”或 eta(2)-烯基配合物。该配合物准备与还原 wt IspH 中的 E126(和 H124)的 H+相互作用,导致水的损失并形成 eta(1)-烯丙基配合物。还原后,它形成了 eta(3)-烯丙基 pi-配合物(即含有烯丙基阴离子),质子化(在 C2 或 C4 处)导致产物形成。我们发现炔二磷酸酯(如丙炔二磷酸酯)是有效的 IspH 抑制剂,并且同样形成金属环配合物,这一点可以通过(1)H、(2)H 和(13)C ENDOR 得到证明,其中观察到大约 6 MHz 的(13)C 和 10 MHz 的(1)H 的超精细耦合。总的来说,这些结果具有广泛的普遍意义,因为它们提供了关于 IspH 催化和抑制作用的新见解,涉及有机金属物种,并且可能适用于其他含有 Fe(4)S(4)的蛋白质,如 IspG。