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植物无义抑制tRNA(Tyr)基因在体外表达水平极低,原因是含内含子的前体tRNA剪接效率低下。

Plant nonsense suppressor tRNA(Tyr) genes are expressed at very low levels in vitro due to inefficient splicing of the intron-containing pre-tRNAs.

作者信息

Szweykowska-Kulinska Z, Beier H

机构信息

Institut für Biochemie, Bayerische Julius-Maximilians-Universität, Würzburg, FRG.

出版信息

Nucleic Acids Res. 1991 Feb 25;19(4):707-12. doi: 10.1093/nar/19.4.707.

DOI:10.1093/nar/19.4.707
PMID:2017357
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC333700/
Abstract

Oligonucleotide-directed mutagenesis was used to generate amber, ochre and opal suppressors from cloned Arabidopsis and Nicotiana tRNA(Tyr) genes. The nonsense suppressor tRNA(Tyr) genes were efficiently transcribed in HeLa and yeast nuclear extracts, however, intron excision from all mutant pre-tRNAs(Tyr) was severely impaired in the homologous wheat germ extract as well as in the yeast in vitro splicing system. The change of one nucleotide in the anticodon of suppressor pre-tRNAs leads to a distortion of the potential intron-anticodon interaction. In order to demonstrate that this caused the reduced splicing efficiency, we created a point mutation in the intron of Arabidopsis tRNA(Tyr) which affected the interaction with the wild-type anticodon. As expected, the resulting pre-tRNA was also inefficiently spliced. Another mutation in the intron, which restored the base-pairing between the amber anticodon and the intron of pre-tRNA(Tyr), resulted in an excellent substrate for wheat germ splicing endonuclease. This type of amber suppressor tRNA(Tyr) gene which yields high levels of mature tRNA(Tyr) should be useful for studying suppression in higher plants.

摘要

利用寡核苷酸定向诱变技术,从克隆的拟南芥和烟草tRNA(Tyr)基因中产生琥珀型、赭石型和乳白型抑制基因。无义抑制tRNA(Tyr)基因在HeLa细胞和酵母核提取物中能有效转录,然而,在同源小麦胚提取物以及酵母体外剪接系统中,所有突变前体tRNA(Tyr)的内含子切除都严重受损。抑制性前体tRNA反密码子中一个核苷酸的改变导致潜在的内含子 - 反密码子相互作用发生扭曲。为了证明这导致了剪接效率降低,我们在拟南芥tRNA(Tyr)的内含子中创建了一个点突变,该突变影响了与野生型反密码子的相互作用。正如预期的那样,产生的前体tRNA也剪接效率低下。内含子中的另一个突变恢复了琥珀型反密码子与前体tRNA(Tyr)内含子之间的碱基配对,产生了一种适合小麦胚剪接内切酶的优良底物。这种能产生高水平成熟tRNA(Tyr)的琥珀型抑制tRNA(Tyr)基因,对于研究高等植物中的抑制作用应该是有用的。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/afe6/333700/676923b41346/nar00240-0021-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/afe6/333700/5cb0249815a3/nar00240-0020-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/afe6/333700/676923b41346/nar00240-0021-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/afe6/333700/5cb0249815a3/nar00240-0020-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/afe6/333700/676923b41346/nar00240-0021-a.jpg

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Plant nonsense suppressor tRNA(Tyr) genes are expressed at very low levels in vitro due to inefficient splicing of the intron-containing pre-tRNAs.植物无义抑制tRNA(Tyr)基因在体外表达水平极低,原因是含内含子的前体tRNA剪接效率低下。
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引用本文的文献

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Translational nonsense codon suppression as indicator for functional pre-tRNA splicing in transformed Arabidopsis hypocotyl-derived calli.翻译无义密码子抑制作为转化的拟南芥下胚轴来源愈伤组织中功能性前体tRNA剪接的指标。
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Plant nuclear tRNA(Met) genes are ubiquitously interrupted by introns.

本文引用的文献

1
Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei.从分离的哺乳动物细胞核的可溶性提取物中,RNA聚合酶II进行准确的转录起始。
Nucleic Acids Res. 1983 Mar 11;11(5):1475-89. doi: 10.1093/nar/11.5.1475.
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6
Expression of variant nuclear Arabidopsis tRNA(Ser) genes and pre-tRNA maturation differ in HeLa, yeast and wheat germ extracts.拟南芥变异型细胞核tRNA(Ser)基因的表达及前体tRNA成熟在人宫颈癌HeLa细胞、酵母和麦胚提取物中存在差异。
Mol Gen Genet. 1992 May;233(1-2):201-8. doi: 10.1007/BF00587580.
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Nucleotide sequence of a nuclear tRNA(Tyr) gene from Triticum aestivum.普通小麦核tRNA(酪氨酸)基因的核苷酸序列
Plant Mol Biol. 1992 Apr;18(6):1207-8. doi: 10.1007/BF00047729.
8
Sequence and structure requirements for the biosynthesis of pseudouridine (psi 35) in plant pre-tRNA(Tyr).植物前体tRNA(Tyr)中假尿苷(ψ35)生物合成的序列和结构要求
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9
The tRNA(Tyr) multigene family of Nicotiana rustica: genome organization, sequence analyses and expression in vitro.黄花烟草的tRNA(酪氨酸)多基因家族:基因组组织、序列分析及体外表达
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酵母tRNATyr基因内含子对其tRNA产物的正确修饰至关重要。
Nature. 1983 Apr 21;302(5910):681-7. doi: 10.1038/302681a0.
4
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Proc Natl Acad Sci U S A. 1982 Oct;79(19):5813-7. doi: 10.1073/pnas.79.19.5813.
5
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EMBO J. 1984 Nov;3(11):2445-52. doi: 10.1002/j.1460-2075.1984.tb02154.x.
6
Oligonucleotide-directed mutagenesis: a simple method using two oligonucleotide primers and a single-stranded DNA template.寡核苷酸定向诱变:一种使用两条寡核苷酸引物和单链DNA模板的简单方法。
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Structure and transcription of eukaryotic tRNA genes.真核生物tRNA基因的结构与转录
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8
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EMBO J. 1987 Sep;6(9):2811-8. doi: 10.1002/j.1460-2075.1987.tb02577.x.
9
A gene for the major cytoplasmic tRNATyr from Nicotiana rustica contains a 13 nucleotides long intron.来自黄花烟草的主要细胞质tRNATyr基因含有一个13个核苷酸长的内含子。
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10
Intron mutations affect splicing of Saccharomyces cerevisiae SUP53 precursor tRNA.内含子突变影响酿酒酵母SUP53前体tRNA的剪接。
Mol Cell Biol. 1986 Jul;6(7):2674-83. doi: 10.1128/mcb.6.7.2674-2683.1986.