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染色质:剪接调控的终极疆域?

Chromatin: the final frontier in splicing regulation?

机构信息

Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA 92093-0651, USA.

出版信息

Dev Cell. 2010 Mar 16;18(3):336-8. doi: 10.1016/j.devcel.2010.03.002.

DOI:10.1016/j.devcel.2010.03.002
PMID:20230741
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6586464/
Abstract

Pre-mRNA splicing, once thought to be a strictly posttranscriptional event in gene expression, is subject to a multitiered network of regulation. Luco et al. now report in Science that this regulation seems to begin with chromatin modifications, suggesting that the histone code may be a prequel to the splicing code.

摘要

mRNA 前体剪接,曾一度被认为是基因表达中转录后严格发生的事件,现在受到多层次的调控网络的调控。Luco 等人现在在《科学》杂志上报告称,这种调控似乎始于染色质修饰,这表明组蛋白密码可能是剪接密码的前奏。

相似文献

1
Chromatin: the final frontier in splicing regulation?染色质:剪接调控的终极疆域?
Dev Cell. 2010 Mar 16;18(3):336-8. doi: 10.1016/j.devcel.2010.03.002.
2
Regulation of alternative splicing by histone modifications.组蛋白修饰调控可变剪接。
Science. 2010 Feb 19;327(5968):996-1000. doi: 10.1126/science.1184208. Epub 2010 Feb 4.
3
A lncRNA regulates alternative splicing via establishment of a splicing-specific chromatin signature.一种长链非编码RNA通过建立剪接特异性染色质特征来调控可变剪接。
Nat Struct Mol Biol. 2015 May;22(5):370-6. doi: 10.1038/nsmb.3005. Epub 2015 Apr 6.
4
Neuronal regulation of pre-mRNA splicing by polypyrimidine tract binding proteins, PTBP1 and PTBP2.多聚嘧啶 tract 结合蛋白 PTBP1 和 PTBP2 对前体 mRNA 剪接的神经元调控。
Crit Rev Biochem Mol Biol. 2012 Jul-Aug;47(4):360-78. doi: 10.3109/10409238.2012.691456. Epub 2012 Jun 2.
5
Cross-talk in transcription, splicing and chromatin: who makes the first call?转录、剪接和染色质的串扰:谁先打第一通电话?
Biochem Soc Trans. 2010 Oct;38(5):1251-6. doi: 10.1042/BST0381251.
6
Perturbation of chromatin structure globally affects localization and recruitment of splicing factors.染色质结构的扰动会全局影响剪接因子的定位和募集。
PLoS One. 2012;7(11):e48084. doi: 10.1371/journal.pone.0048084. Epub 2012 Nov 12.
7
Pre-mRNA splicing: a complex picture in higher definition.前体mRNA剪接:高清复杂图景
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A new link between transcriptional initiation and pre-mRNA splicing: The RNA binding histone variant H2A.B.转录起始与前体mRNA剪接之间的新联系:RNA结合组蛋白变体H2A.B.
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9
Histone marks regulate the epithelial-to-mesenchymal transition via alternative splicing.组蛋白标记物通过选择性剪接调控上皮-间充质转化。
Cell Rep. 2022 Feb 15;38(7):110357. doi: 10.1016/j.celrep.2022.110357.
10
Design principles of interconnections between chromatin and pre-mRNA splicing.染色质与前体 mRNA 剪接之间相互作用的设计原则。
Trends Biochem Sci. 2012 Jun;37(6):248-53. doi: 10.1016/j.tibs.2012.02.002. Epub 2012 Mar 5.

引用本文的文献

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Towards understanding of PRC2 binding to RNA.旨在理解 PRC2 与 RNA 的结合。
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Classifying Included and Excluded Exons in Exon Skipping Event Using Histone Modifications.利用组蛋白修饰对外显子跳跃事件中的包含和排除外显子进行分类
Front Genet. 2018 Oct 1;9:433. doi: 10.3389/fgene.2018.00433. eCollection 2018.
3
RNA-seq analysis of impact of PNN on gene expression and alternative splicing in corneal epithelial cells.角膜上皮细胞中蛋白聚糖对基因表达和可变剪接影响的RNA测序分析
Mol Vis. 2016 Jan 16;22:40-60. eCollection 2016.
4
Drosophila Kdm4 demethylases in histone H3 lysine 9 demethylation and ecdysteroid signaling.果蝇 Kdm4 去甲基酶在组蛋白 H3 赖氨酸 9 去甲基化和蜕皮激素信号中的作用。
Sci Rep. 2013 Oct 8;3:2894. doi: 10.1038/srep02894.
5
USP49 deubiquitinates histone H2B and regulates cotranscriptional pre-mRNA splicing.USP49使组蛋白H2B去泛素化并调节共转录前体mRNA剪接。
Genes Dev. 2013 Jul 15;27(14):1581-95. doi: 10.1101/gad.211037.112. Epub 2013 Jul 3.
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Roles of histone deacetylases in epigenetic regulation: emerging paradigms from studies with inhibitors.组蛋白去乙酰化酶在表观遗传调控中的作用:抑制剂研究中的新范例。
Clin Epigenetics. 2012 Mar 12;4(1):5. doi: 10.1186/1868-7083-4-5.
7
Combinations of histone modifications mark exon inclusion levels.组蛋白修饰的组合标记外显子的包含水平。
PLoS One. 2012;7(1):e29911. doi: 10.1371/journal.pone.0029911. Epub 2012 Jan 5.
8
Mechanisms and consequences of alternative polyadenylation.可变多聚腺苷酸化的机制和后果。
Mol Cell. 2011 Sep 16;43(6):853-66. doi: 10.1016/j.molcel.2011.08.017.
9
Hu proteins regulate alternative splicing by inducing localized histone hyperacetylation in an RNA-dependent manner.Hu 蛋白通过 RNA 依赖性方式诱导局部组蛋白 hyperacetylation 来调节可变剪接。
Proc Natl Acad Sci U S A. 2011 Sep 6;108(36):E627-35. doi: 10.1073/pnas.1103344108. Epub 2011 Aug 1.
10
Pre-mRNA splicing: where and when in the nucleus.前体 mRNA 剪接:细胞核中的位置和时间。
Trends Cell Biol. 2011 Jun;21(6):336-43. doi: 10.1016/j.tcb.2011.03.003. Epub 2011 Apr 21.

本文引用的文献

1
Regulation of alternative splicing by histone modifications.组蛋白修饰调控可变剪接。
Science. 2010 Feb 19;327(5968):996-1000. doi: 10.1126/science.1184208. Epub 2010 Feb 4.
2
Genome-wide analysis of PTB-RNA interactions reveals a strategy used by the general splicing repressor to modulate exon inclusion or skipping.全基因组分析表明 PTB-RNA 相互作用揭示了一般剪接抑制剂用来调节外显子包含或跳过的策略。
Mol Cell. 2009 Dec 25;36(6):996-1006. doi: 10.1016/j.molcel.2009.12.003.
3
Biased chromatin signatures around polyadenylation sites and exons.多聚腺苷酸化位点和外显子周围的染色质特征偏差。
Mol Cell. 2009 Oct 23;36(2):245-54. doi: 10.1016/j.molcel.2009.10.008.
4
Nucleosomes are well positioned in exons and carry characteristic histone modifications.核小体在外显子中定位良好,并带有特征性的组蛋白修饰。
Genome Res. 2009 Oct;19(10):1732-41. doi: 10.1101/gr.092353.109. Epub 2009 Aug 17.
5
Chromatin organization marks exon-intron structure.染色质组织标记外显子-内含子结构。
Nat Struct Mol Biol. 2009 Sep;16(9):990-5. doi: 10.1038/nsmb.1659.
6
Nucleosome positioning as a determinant of exon recognition.核小体定位作为外显子识别的一个决定因素。
Nat Struct Mol Biol. 2009 Sep;16(9):996-1001. doi: 10.1038/nsmb.1658.
7
ESRP1 and ESRP2 are epithelial cell-type-specific regulators of FGFR2 splicing.ESRP1和ESRP2是FGFR2剪接的上皮细胞类型特异性调节因子。
Mol Cell. 2009 Mar 13;33(5):591-601. doi: 10.1016/j.molcel.2009.01.025.
8
Differential chromatin marking of introns and expressed exons by H3K36me3.H3K36me3对内含子和表达外显子的差异性染色质标记。
Nat Genet. 2009 Mar;41(3):376-81. doi: 10.1038/ng.322. Epub 2009 Feb 1.
9
Coupling transcription and alternative splicing.耦合转录与可变剪接
Adv Exp Med Biol. 2007;623:175-89. doi: 10.1007/978-0-387-77374-2_11.
10
Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing.三甲基化组蛋白H3赖氨酸4的识别有助于转录起始后因子的募集和前体mRNA剪接。
Mol Cell. 2007 Nov 30;28(4):665-76. doi: 10.1016/j.molcel.2007.11.010.