Chemistry Department, University College London, London, UK WC1H 0AJ.
Phys Chem Chem Phys. 2010 Apr 14;12(14):3463-73. doi: 10.1039/b921897a. Epub 2010 Jan 18.
The structural preferences of the neutral gas-phase glycine tripeptide have been investigated using a variety of strategies including a hierarchy of electronic structure theory (encompassing HF/3-21G single-point energy calculation and geometry optimisation, B3LYP/6-31G(d) geometry optimisation and MP2/6-31+G(d) single-point energy calculation and/or geometry optimisation). The structures and relative stabilities of the 20 most stable conformers identified were verified by M05-2X and mPW2-PLYP-D calculations. The most stable conformer located has a folded gamma-turn structure, with an NH...N interaction between the N-terminal nitrogen and the amide hydrogen of glycine (2) and an NH...O interaction between the amide hydrogen of glycine (3) and the carboxyl oxygen of glycine (1). The results show a clear preference for folded over extended structures.
已使用多种策略研究中性气相甘氨酸三肽的结构偏好,包括电子结构理论的层次(包括 HF/3-21G 单点能计算和几何优化、B3LYP/6-31G(d)几何优化以及 MP2/6-31+G(d)单点能计算和/或几何优化)。通过 M05-2X 和 mPW2-PLYP-D 计算验证了确定的 20 个最稳定构象体的结构和相对稳定性。定位的最稳定构象体具有折叠的γ-转角结构,其中甘氨酸(2)的 N 末端氮与酰胺氢之间存在 NH...N 相互作用,甘氨酸(3)的酰胺氢与甘氨酸(1)的羧基氧之间存在 NH...O 相互作用。结果表明,折叠结构明显优于扩展结构。