Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI 98622, USA.
Phys Chem Chem Phys. 2011 Sep 21;13(35):15774-84. doi: 10.1039/c1cp20656g. Epub 2011 Jun 17.
We have theoretically investigated the low energy conformers of neutral glycine (NH(2)CH(2)COOH) and its isomer methylcarbamic acid (CH(3)NHCOOH) in the gas phase. A total of 16 different levels of the theory, including CCSD(T), MP2 and B3LYP methods with various Pople and Dunning type basis sets with and without polarization and diffuse functions were used. We found eight low energy glycine conformers, where the heavy atoms in three have a planar backbone, and four low energy methylcarbamic acid conformers all with non-planar backbones. Interestingly at all levels of theory, we found that the most stable methylcarbamic acid conformer is significantly lower in energy than the lowest energy glycine conformer. The MP2 level and single point CCSD(T) calculations show the lowest energy methylcarbamic acid conformer to be between 31 to 37 kJ mol(-1) lower in energy than the lowest energy glycine conformer. These calculations suggest that methylcarbamic acid might serve as a precursor to glycine formation in the Interstellar Medium (ISM). We also report the theoretical harmonic vibrational frequencies, infrared intensities, moment of inertia, rotational constants and dipole moments for all of the conformers. In order to understand how glycine or methylcarbamic acid might be formed in the ISM, larger calculations which model glycine or its isomer interacting with several surrounding molecules, such as water, are needed. We demonstrate that B3LYP method should provide a reliable and computationally practical approach to modeling these larger systems.
我们从理论上研究了中性甘氨酸(NH(2)CH(2)COOH)及其异构体甲基氨基甲酸(CH(3)NHCOOH)在气相中的低能构象。总共使用了 16 种不同理论水平的方法,包括 CCSD(T)、MP2 和 B3LYP 方法,以及带有和不带有极化和弥散函数的各种 Pople 和 Dunning 类型基组。我们发现了 8 种低能甘氨酸构象,其中 3 种重原子具有平面骨架,4 种低能甲基氨基甲酸构象都具有非平面骨架。有趣的是,在所有理论水平上,我们发现最稳定的甲基氨基甲酸构象的能量明显低于最低能量甘氨酸构象。MP2 水平和单点 CCSD(T)计算表明,最低能量的甲基氨基甲酸构象的能量比最低能量的甘氨酸构象低 31 到 37 kJ mol(-1)。这些计算表明,甲基氨基甲酸可能是星际介质(ISM)中甘氨酸形成的前体。我们还报告了所有构象的理论谐振动频率、红外强度、转动惯量、转动常数和偶极矩。为了了解甘氨酸或甲基氨基甲酸如何在 ISM 中形成,需要进行更大规模的计算,模拟甘氨酸或其异构体与几个周围分子(如水)相互作用。我们证明 B3LYP 方法应该为模拟这些更大的系统提供一种可靠且计算实用的方法。