Suppr超能文献

采用通用色谱法纯化酵母核糖体,提高其纯度、活性和结构完整性。

Enhanced purity, activity and structural integrity of yeast ribosomes purified using a general chromatographic method.

机构信息

Department of Cell Biology & Molecular Genetics, University of Maryland, College Park, MD, USA.

出版信息

RNA Biol. 2010 May-Jun;7(3):354-60. doi: 10.4161/rna.7.3.11648. Epub 2010 May 22.

Abstract

One of the major challenges facing researchers working with eukaryotic ribosomes lies in their lability relative to their eubacterial and archael counterparts. In particular, lysis of cells and purification of eukaryotic ribosomes by conventional differential ultracentrifugation methods exposes them for long periods of time to a wide range of co-purifying proteases and nucleases, negatively impacting their structural integrity and functionality. A chromatographic method using a cysteine charged Sulfolink resin was adapted to address these problems. This fast and simple method significantly reduces co-purifying proteolytic and nucleolytic activities, producing good yields of highly biochemically active yeast ribosomes with fewer nicks in their rRNAs. In particular, the chromatographic purification protocol significantly improved the quality of ribosomes isolated from mutant cells. This method is likely applicable to mammalian ribosomes as well. The simplicity of the method, and the enhanced purity and activity of chromatographically purified ribosome represents a significant technical advancement for the study of eukaryotic ribosomes.

摘要

真核核糖体的研究人员面临的主要挑战之一是,与原核生物和古菌相比,它们的不稳定性。特别是,通过常规差速超速离心方法裂解细胞并纯化真核核糖体,使它们长时间暴露于广泛的共纯化蛋白酶和核酸酶中,从而对其结构完整性和功能产生负面影响。一种使用半胱氨酸电荷 Sulfolink 树脂的色谱方法被用来解决这些问题。这种快速而简单的方法显著降低了共纯化的蛋白水解和核酸酶活性,产生了高生化活性的酵母核糖体,其 rRNA 中的缺口较少。特别是,色谱纯化方案显著提高了从突变细胞中分离的核糖体的质量。这种方法也可能适用于哺乳动物核糖体。该方法的简单性以及色谱纯化核糖体的增强的纯度和活性代表了真核核糖体研究的重大技术进步。

相似文献

1
Enhanced purity, activity and structural integrity of yeast ribosomes purified using a general chromatographic method.
RNA Biol. 2010 May-Jun;7(3):354-60. doi: 10.4161/rna.7.3.11648. Epub 2010 May 22.
2
Chromatographic purification of highly active yeast ribosomes.
J Vis Exp. 2011 Oct 24(56):3214. doi: 10.3791/3214.
3
Isolation of ribosomes by chromatography.
Cold Spring Harb Protoc. 2015 Apr 1;2015(4):359-62. doi: 10.1101/pdb.prot081349.
4
Crystal structure of the eukaryotic ribosome.
Science. 2010 Nov 26;330(6008):1203-9. doi: 10.1126/science.1194294.
6
Eukaryotic ribosomal proteins lacking a eubacterial counterpart: important players in ribosomal function.
Mol Microbiol. 2006 Mar;59(6):1651-63. doi: 10.1111/j.1365-2958.2006.05054.x.
7
Affinity purification of ribosomes to access the translatome.
Methods. 2009 Jul;48(3):306-10. doi: 10.1016/j.ymeth.2009.04.003. Epub 2009 May 3.
9
rRNA modifications and ribosome function.
Trends Biochem Sci. 2002 Jul;27(7):344-51. doi: 10.1016/s0968-0004(02)02109-6.
10
Active yeast ribosome preparation using monolithic anion exchange chromatography.
RNA Biol. 2017 Feb;14(2):188-196. doi: 10.1080/15476286.2016.1270004. Epub 2016 Dec 16.

引用本文的文献

1
2
Use of Baby Spinach and Broccoli for imaging of structured cellular RNAs.
Nucleic Acids Res. 2017 Feb 17;45(3):1404-1415. doi: 10.1093/nar/gkw794.
3
Active yeast ribosome preparation using monolithic anion exchange chromatography.
RNA Biol. 2017 Feb;14(2):188-196. doi: 10.1080/15476286.2016.1270004. Epub 2016 Dec 16.
5
Eukaryotic rpL10 drives ribosomal rotation.
Nucleic Acids Res. 2014 Feb;42(3):2049-63. doi: 10.1093/nar/gkt1107. Epub 2013 Nov 8.
6
Proofreading of pre-40S ribosome maturation by a translation initiation factor and 60S subunits.
Nat Struct Mol Biol. 2012 Aug;19(8):744-53. doi: 10.1038/nsmb.2308. Epub 2012 Jul 1.
8
Chromatographic purification of highly active yeast ribosomes.
J Vis Exp. 2011 Oct 24(56):3214. doi: 10.3791/3214.
9
High throughput structural analysis of yeast ribosomes using hSHAPE.
RNA Biol. 2011 May-Jun;8(3):478-87. doi: 10.4161/rna.8.3.14453. Epub 2011 May 1.
10
A flexible loop in yeast ribosomal protein L11 coordinates P-site tRNA binding.
Nucleic Acids Res. 2010 Dec;38(22):8377-89. doi: 10.1093/nar/gkq711. Epub 2010 Aug 12.

本文引用的文献

1
Single-particle reconstruction of biological macromolecules in electron microscopy--30 years.
Q Rev Biophys. 2009 Aug;42(3):139-58. doi: 10.1017/S0033583509990059.
3
Affinity purification of ribosomes to access the translatome.
Methods. 2009 Jul;48(3):306-10. doi: 10.1016/j.ymeth.2009.04.003. Epub 2009 May 3.
4
The eukaryotic ribosome: current status and challenges.
J Biol Chem. 2009 May 1;284(18):11761-5. doi: 10.1074/jbc.R800074200. Epub 2008 Dec 31.
5
A novel chromatography system to isolate active ribosomes from pathogenic bacteria.
RNA. 2008 Jan;14(1):188-95. doi: 10.1261/rna.692408. Epub 2007 Nov 12.
6
A late-acting quality control process for mature eukaryotic rRNAs.
Mol Cell. 2006 Nov 17;24(4):619-26. doi: 10.1016/j.molcel.2006.10.008.
7
An arc of unpaired "hinge bases" facilitates information exchange among functional centers of the ribosome.
Mol Cell Biol. 2006 Dec;26(23):8992-9002. doi: 10.1128/MCB.01311-06. Epub 2006 Sep 25.
8
Identification of functionally important amino acids of ribosomal protein L3 by saturation mutagenesis.
Mol Cell Biol. 2005 Dec;25(24):10863-74. doi: 10.1128/MCB.25.24.10863-10874.2005.
10
Liver microsomes; an integrated morphological and biochemical study.
J Biophys Biochem Cytol. 1956 Mar 25;2(2):171-200. doi: 10.1083/jcb.2.2.171.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验