Center for Superfunctional Materials, Department of Chemistry, Pohang University of Science and Technology, San 31, Hyojadong, Namgu, 790-784 Pohang, South Korea.
Phys Chem Chem Phys. 2010 Jun 21;12(23):6278-87. doi: 10.1039/b925551f. Epub 2010 Apr 20.
Short Strong Hydrogen Bonds (SSHBs) play an important role in many fields of physics, chemistry and biology. Since it is known that SSHBs exist in many biological systems, the role of hydrogen bonding motifs has been particularly interesting in enzyme catalysis, bio-metabolism, protein folding and proton transport phenomena. To explore the characteristic features of neutral, anionic and cationic hydrogen bonds, we have carried out theoretical studies of diverse homogeneous and heterogeneous hydrogen bonded dimers including water, peroxides, alcohols, ethers, aldehydes, ketones, carboxylic acids, anhydrides, and nitriles. Geometry optimization and harmonic frequency calculations are performed at the levels of Density Functional Theory (DFT) and Møller-Plesset second order perturbation (MP2) theory. First principles Car-Parrinello molecular dynamics (CPMD) simulations are performed to obtain IR spectra derived from velocity- and dipole-autocorrelation functions. We find that the hydrogen bond energy is roughly inversely proportional to the fourth power of the r(O/N-H) distance. Namely, the polarization of the proton accepting O/N atom by the proton-donating H atom reflects most of the binding energy in these diverse cation/anion/neutral hydrogen bonds. The present study gives deeper insight into the nature of hydrogen-bonded dimers including SSHBs.
短强氢键(SSHBs)在物理、化学和生物学的许多领域都起着重要的作用。由于已知 SSHBs 存在于许多生物系统中,因此氢键模体在酶催化、生物代谢、蛋白质折叠和质子传递现象中的作用尤其有趣。为了探索中性、阴离子和阳离子氢键的特征,我们对包括水、过氧化物、醇、醚、醛、酮、羧酸、酐和腈在内的各种同质和异质氢键二聚体进行了理论研究。在密度泛函理论(DFT)和 Møller-Plesset 二级微扰(MP2)理论水平上进行了几何优化和简谐频率计算。采用第一性原理 Car-Parrinello 分子动力学(CPMD)模拟来获得源自速度和偶极子自相关函数的红外光谱。我们发现氢键能大致与 r(O/N-H)距离的四次方成反比。也就是说,质子供体 H 原子对质子受体 O/N 原子的极化反映了这些不同的阳离子/阴离子/中性氢键中大部分的结合能。本研究深入了解了包括 SSHBs 在内的氢键二聚体的性质。