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溶剂对细胞色素 c 氧化酶交联组氨酸-酪氨酸配体的物理化学性质的影响。

Solvent effects on the physicochemical properties of the cross-linked histidine-tyrosine ligand of cytochrome c oxidase.

机构信息

Department of Chemistry and Biochemistry, University of California, Santa Cruz, California 95064, USA.

出版信息

J Phys Chem B. 2010 May 20;114(19):6409-25. doi: 10.1021/jp909574v.

Abstract

Density functional theory was used to explore the effects of aqueous solvation on the structure, vibrational frequencies, and the electronic absorption spectrum of 2-(4-methylimidazol-1-yl)-phenol (Me-ImPhOH), a chemical analogue of the cross-linked histidine-tyrosine Cu(B) ligand of cytochrome c oxidase. In addition, the phenolic-OH pK(a), the anodic redox potential for the biring radical/anion couple, and the phenolic-OH bond dissociation energy were calculated relative to phenol using a series of isodesmic reactions. In the gas phase, the imidazole moiety stabilizes the biring anion for all the models and greatly decreases the phenolic-OH pK(a) relative to phenol. Moreover, the conductor-like polarizable continuum model (C-PCM)-water-solvated reactions predict Delta pK(a) values that are five times smaller than the gas-phase reactions, in agreement with the proposed role of the cross-linked histidine-tyrosine as a proton donor in the enzyme. For the neutral biring radical solvation models, the imidazole moiety induces a high degree of asymmetry into the phenol ring when compared to unmodified phenoxyl radical. The biring radical pi-bonds of the imidazole ring are more localized when compared to unmodified 1-methylimidazole and Me-ImPhOH solvation models, suggesting reduced aromaticity for all biring radical solvation models. The C-PCM-water-solvated reactions predict relative biring radical reduction potentials that are an order of magnitude smaller than the gas-phase reactions. The biring O-H bond is weakened relative to phenol by less than 4 kcal/mol for all the reactions studied, suggesting that the imidazole moiety does not facilitate H-atom abstraction in the enzyme. Together, these results demonstrate the sensitive nature of the proton and electron donating ability of the histidine-tyrosine cross-linked ligand in cytochrome c oxidase and suggest that for quantitative predictions of reaction energies and thermodynamic properties, models of this ligand should take care to account for changes in environment and, more specifically, hydrogen bonding interactions.

摘要

密度泛函理论被用于研究水溶剂化对 2-(4-甲基咪唑-1-基)-苯酚(Me-ImPhOH)结构、振动频率和电子吸收光谱的影响,Me-ImPhOH 是细胞色素 c 氧化酶交联组氨酸-酪氨酸 Cu(B)配体的化学类似物。此外,还通过一系列等电子反应计算了酚-OH 的 pK(a)、双自由基/阴离子对的阳极氧化还原电位以及酚-OH 键离解能,相对于苯酚。在气相中,咪唑部分稳定了双自由基阴离子,所有模型的酚-OH pK(a)相对于苯酚都大大降低。此外,导体相似极化连续体模型(C-PCM)-水溶剂化反应预测的ΔpK(a)值比气相反应小五倍,与交联组氨酸-酪氨酸作为酶中质子供体的作用一致。对于中性双自由基溶剂化模型,与未修饰的苯氧自由基相比,咪唑部分使酚环具有高度的不对称性。与未修饰的 1-甲基咪唑和 Me-ImPhOH 溶剂化模型相比,咪唑环的双自由基π键具有更高的局部性,表明所有双自由基溶剂化模型的芳香性降低。C-PCM-水溶剂化反应预测的相对双自由基还原电位比气相反应小一个数量级。与苯酚相比,所有反应中双自由基 O-H 键的强度都减弱了不到 4 kcal/mol,表明咪唑部分不会促进酶中 H 原子的提取。综上所述,这些结果表明细胞色素 c 氧化酶中组氨酸-酪氨酸交联配体质子和电子供体能力的敏感性,并表明对于反应能量和热力学性质的定量预测,该配体的模型应注意环境的变化,更具体地说,应注意氢键相互作用的变化。

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