Tomson Farol, Bailey James A, Gennis Robert B, Unkefer Clifford J, Li Zizhong, Silks Louis A, Martinez Rodolfo A, Donohoe Robert J, Dyer R Brian, Woodruff William H
Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA.
Biochemistry. 2002 Dec 3;41(48):14383-90. doi: 10.1021/bi026370c.
Infrared spectroscopy, isotopic labeling ([(15)N(delta,epsilon)]histidine and ring-deuterated tyrosine), synthetic model studies, and normal mode calculations are employed to search for the spectroscopic signatures of the unique, covalently linked (His N(epsilon)-C(epsilon) Tyr) biring structure in the heme-copper oxidases. The specific enzyme examined is the cytochrome bo(3) quinol oxidase of E. coli. Infrared features of histidine and tyrosine are identified in the frequency regions of imidazole and phenol ring stretching modes (1350-1650 cm(-1)) and C-H and N-H stretching modes as well as overtones and combinations (>3000 cm(-1)). Two of these, at ca. 1480 and 1550 cm(-1), and their combination tones between 3010 and 3040 cm(-1), are definitively identified with the biring structure involving H284 and Y288 in the E. coli enzyme. Studies of a synthetic analogue of the H-Y structure, 4-methylimidazole covalently linked to p-cresol, show that a feature near 1540 cm(-1) is unique to the biring structure and is absent from the infrared spectrum of 4-methylimidazole or p-cresol alone. This feature is readily detectable by infrared difference techniques, and offers a direct spectroscopic probe for potential radical production involving the H-Y structure in the O(2) reduction cycle of the oxidases.
采用红外光谱、同位素标记([(15)N(δ,ε)]组氨酸和环氘代酪氨酸)、合成模型研究以及简正模式计算,来探寻血红素-铜氧化酶中独特的、共价连接的(组氨酸N(ε)-C(ε) 酪氨酸)双环结构的光谱特征。所研究的特定酶是大肠杆菌的细胞色素bo(3) 喹啉氧化酶。在咪唑和酚环伸缩振动模式(1350 - 1650 cm(-1))以及C - H和N - H伸缩振动模式以及泛音和组合振动(>3000 cm(-1))的频率区域中,鉴定出了组氨酸和酪氨酸的红外特征。其中两个特征,大约在1480和1550 cm(-1)处,以及它们在3010至3040 cm(-1)之间的组合音,被明确鉴定为与大肠杆菌酶中涉及H284和Y288的双环结构相关。对H - Y结构的合成类似物,即与对甲酚共价连接的4 - 甲基咪唑的研究表明,1540 cm(-1)附近的一个特征是双环结构所特有的,单独的4 - 甲基咪唑或对甲酚的红外光谱中不存在该特征。这个特征可以通过红外差分技术很容易地检测到,并为氧化酶的O(2) 还原循环中涉及H - Y结构的潜在自由基产生提供了一种直接的光谱探针。